PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462858734
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family WRKY
Protein Properties Length: 210aa    MW: 24057 Da    PI: 6.5773
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462858734genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY76.43.3e-241878258
               --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE.-SSSTTEEEEEEES--SS CS
       WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkver.saedpkvveitYegeHnh 58
               +Dgy+WrKYGqK+++g+++pr YYrCt++   gCp++k+v++ +++dp ++ + Y++eH++
  462858734 18 HDGYQWRKYGQKMIRGNTYPRCYYRCTYHqdhGCPATKHVDQtNSQDPPLFRVLYTNEHTC 78
               7***************************98999*******762678*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.4E-25278IPR003657WRKY domain
SuperFamilySSF1182903.01E-221178IPR003657WRKY domain
SMARTSM007741.1E-331780IPR003657WRKY domain
PfamPF031061.7E-241978IPR003657WRKY domain
PROSITE profilePS5081120.0481976IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MRKVRISTRT EYTYAPYHDG YQWRKYGQKM IRGNTYPRCY YRCTYHQDHG CPATKHVDQT  60
NSQDPPLFRV LYTNEHTCIS TDASSIHIQQ MADASLRKAE MELPSLTHCS VGHEVIKEEK  120
DAIVSSLLNV MCGGDVATST DVMHDMQENT TALLSSKYSN LSSMVRRSSH EAPVLLPASN  180
ERKMDFVEPL ESHWLEPLDL GWFIEYTGNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-13576269WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462858734
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004972233.11e-106probable WRKY transcription factor 29
TrEMBLK3XS921e-104K3XS92_SETIT; Uncharacterized protein
STRINGSi004791m1e-105(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118143139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.11e-19WRKY DNA-binding protein 55