PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462858448 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | SBP | ||||||||
Protein Properties | Length: 381aa MW: 42209.6 Da PI: 7.6454 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 127 | 7.3e-40 | 162 | 240 | 1 | 77 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETT..EEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsg..leqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +CqvegC adls+ak+yhrrh+vCe+hskapvv+++g + qrfCqqCsrfhe++efD++k+sCr+rLa+hn+rrrk++ 462858448 162 RCQVEGCMADLSKAKRYHRRHRVCEQHSKAPVVIITGaiMPQRFCQQCSRFHEVDEFDDAKKSCRQRLADHNRRRRKPK 240 6*********************************9984458************************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 9.8E-33 | 159 | 226 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 29.615 | 160 | 239 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.22E-35 | 161 | 242 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 6.1E-32 | 163 | 238 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 381 aa Download sequence Send to blast |
MMNPAAVSAS GSEPDVLGNP VPLPPTPSLF LPIMDQLESS SFLRAEQLTS SYNMEANVPA 60 VLAPNSYAAA DYTSHFGHDH DILHFYPPAS HYLDAGNPYS HFSESTFLPT PQDYYFPTLL 120 EENMGIFGVA PHAPMGISYG GGYRAYYLPA RGGYAYGHYP LRCQVEGCMA DLSKAKRYHR 180 RHRVCEQHSK APVVIITGAI MPQRFCQQCS RFHEVDEFDD AKKSCRQRLA DHNRRRRKPK 240 MTGTNVQLKR RVHVKKSATA KDNGGSSKSM ANRDIMEGSA SMEYDQSLSH GEMARELVDP 300 KGKAPMEQQE CIPQRIPQHA GSPFVLPPSS GTCSPLRQPV SGGNTSNIGP VQETCLALHQ 360 YHQHGNIMQL GQAVFDLDFN Q |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 3e-28 | 163 | 238 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 221 | 238 | KKSCRQRLADHNRRRRKP |
2 | 233 | 250 | RRRRKPKMTGTNVQLKRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the formation of ligules and auricles during leaf organogenesis. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462858448 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004960135.1 | 1e-111 | protein LIGULELESS 1 | ||||
Swissprot | O04003 | 8e-96 | LG1_MAIZE; Protein LIGULELESS 1 | ||||
TrEMBL | A0A0A9DKR3 | 1e-110 | A0A0A9DKR3_ARUDO; Lg1 | ||||
TrEMBL | K3Z6Z5 | 1e-110 | K3Z6Z5_SETIT; Uncharacterized protein | ||||
STRING | Si022315m | 1e-111 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6990 | 34 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02065.1 | 1e-33 | squamosa promoter binding protein-like 8 |
Publications ? help Back to Top | |||
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