PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462857092
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB
Protein Properties Length: 143aa    MW: 16379.2 Da    PI: 10.2686
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462857092genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.11.8e-071442129
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIar 29
                     rg+WT+eEd +l++ +   G  +W+++++
        462857092 14 RGPWTAEEDRKLINFILTNGHCCWRAVPK 42
                     89************************987 PP
2Myb_DNA-binding50.26.1e-1670117148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+WT+eEd +l++ +   G  +W+++++  g+ R++k+c++rw +yl
        462857092  70 RGPWTAEEDRKLINFILTNGHCCWRAVPKLAGLLRCGKSCRLRWTNYL 117
                      89******************************99************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-10544IPR009057Homeodomain-like
SuperFamilySSF466897.18E-8845IPR009057Homeodomain-like
PROSITE profilePS500906.33948IPR017877Myb-like domain
SMARTSM00717151351IPR001005SANT/Myb domain
PfamPF002496.9E-61442IPR001005SANT/Myb domain
CDDcd001677.78E-41643No hitNo description
Gene3DG3DSA:1.10.10.602.3E-2161118IPR009057Homeodomain-like
PROSITE profilePS5129419.27665121IPR017930Myb domain
SMARTSM007172.3E-1269119IPR001005SANT/Myb domain
PfamPF002491.1E-1470117IPR001005SANT/Myb domain
SuperFamilySSF466891.68E-1871143IPR009057Homeodomain-like
CDDcd001671.16E-972117No hitNo description
Gene3DG3DSA:1.10.10.601.5E-5119143IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MGRQPCCDKL GVKRGPWTAE EDRKLINFIL TNGHCCWRAV PKFHHRHRLS PVGLGRMGRQ  60
PCCDKLGVKR GPWTAEEDRK LINFILTNGH CCWRAVPKLA GLLRCGKSCR LRWTNYLRPD  120
LKRGLLTDAE EQVVIDLHAK LGN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C4e-15171439130MYB PROTO-ONCOGENE PROTEIN
1h89_C4e-15171439130MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269|PubMed:23660402}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462857092
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269|PubMed:23660402}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0417711e-116BT041771.1 Zea mays full-length cDNA clone ZM_BFb0051B11 mRNA, complete cds.
GenBankBT0624371e-116BT062437.1 Zea mays full-length cDNA clone ZM_BFb0298A24 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001307849.11e-56uncharacterized protein LOC100101510
RefseqXP_008650758.11e-56uncharacterized protein LOC100101510 isoform X1
RefseqXP_023156216.11e-56uncharacterized protein LOC100101510 isoform X1
SwissprotQ9C7U75e-52MYB20_ARATH; Transcription factor MYB20
TrEMBLA0A1D6I9S69e-56A0A1D6I9S6_MAIZE; Myb domain protein 85
TrEMBLA0A1D6I9S82e-55A0A1D6I9S8_MAIZE; Myb domain protein 85
TrEMBLA0A3L6DY971e-55A0A3L6DY97_MAIZE; Protein ODORANT1
TrEMBLQ4L2141e-55Q4L214_MAIZE; MYB transcription factor
STRINGGRMZM2G104551_P015e-56(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12350.17e-55myb domain protein 42
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]