PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462855563 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | Trihelix | ||||||||
Protein Properties | Length: 324aa MW: 36553.9 Da PI: 6.8066 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 84.7 | 1.2e-26 | 22 | 108 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt..sessstcpyfdqle 86 W k+e+l Li++rrem+ +++++k++k+lWe++s++mr++gf rsp++C++kw+nl k++kk + +++ + + +++y+++++ 462855563 22 WVKEETLSLIALRREMDAHFNTSKSNKHLWEAISARMRDQGFDRSPTMCTDKWRNLLKEFKKARSYARSSAagGNGNAKMAYYKEID 108 ****************************************************************99998752344556888888887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 8.687 | 14 | 78 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 4.1E-5 | 15 | 81 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.8E-6 | 18 | 80 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 6.71E-28 | 20 | 85 | No hit | No description |
Pfam | PF13837 | 3.5E-18 | 21 | 110 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 324 aa Download sequence Send to blast |
AVGHDSSSRA AGSAPKKRAE TWVKEETLSL IALRREMDAH FNTSKSNKHL WEAISARMRD 60 QGFDRSPTMC TDKWRNLLKE FKKARSYARS SAAGGNGNAK MAYYKEIDDL LKRRGKAVGS 120 GFEDANIPFG PVEANGRSIM SMEDRLDDDR HPLPLTAADA VATNGVNPWN WRDTSTNGGD 180 NQVTFGGRVI LVKWGDYTKR IGIDGTAEAI KEAIKSAFGL RTRRAFWLED EDEVVRTLDR 240 DMPIGTYTLH LDDGMTIKLC TFEDADHMTV RTEDKTFYTE EDFRDFLSRR GWTLLREYGG 300 YRIADTLDDL RPGAIYQGMR SLGD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2jmw_A | 5e-40 | 16 | 106 | 1 | 86 | DNA binding protein GT-1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00004 | PBM | Transfer from 920224 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462855563 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353943 | 1e-174 | AK353943.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1003P04. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020195254.1 | 0.0 | trihelix transcription factor GT-4-like | ||||
Swissprot | Q9FX53 | 1e-140 | TGT1_ARATH; Trihelix transcription factor GT-1 | ||||
TrEMBL | A0A3B6B0T6 | 0.0 | A0A3B6B0T6_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446L7H1 | 0.0 | A0A446L7H1_TRITD; Uncharacterized protein | ||||
TrEMBL | A0A446MGU5 | 0.0 | A0A446MGU5_TRITD; Uncharacterized protein | ||||
TrEMBL | A0A453C911 | 0.0 | A0A453C911_AEGTS; Uncharacterized protein | ||||
TrEMBL | W5BAU9 | 0.0 | W5BAU9_WHEAT; Uncharacterized protein | ||||
STRING | Traes_2AL_73E4240F0.2 | 0.0 | (Triticum aestivum) | ||||
STRING | Traes_2BL_692BF6383.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5631 | 37 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13450.1 | 1e-122 | Trihelix family protein |
Publications ? help Back to Top | |||
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