PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462854304 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | GRAS | ||||||||
Protein Properties | Length: 2039aa MW: 231521 Da PI: 7.0672 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 316.5 | 5.6e-97 | 204 | 572 | 3 | 373 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaI 102 +lL++cA+av+++++ a +lL++++++as +gd+ qRla++f+e+L+arl++++++l + +++ s ++e l+a+k+f ++ + k++ + +I 462854304 204 TLLIHCAQAVAANNHMIAIELLKQIKQNASTTGDARQRLAQCFAEGLEARLSGTGNQLWNLHMAERPS---VVEFLKAYKTFMAACCFNKVAVMFSVMTI 300 68***************************************************999999766665555...9**************************** PP GRAS 103 leavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200 ++a+ g++r+Hi+D+++++G+QW+ L++ La+R++g+p+l+iT+++ +++ +++++e g+ L+k A+e+g+pf+f+ +++++e++++e+L+++ +E 462854304 301 MDAIVGKKRLHIVDYGMNYGFQWAGLIRWLAERNGGQPELKITAIACSQHMfcPAQKIKEQGRWLSKCASEFGLPFKFHS-ITTEWEKVSIEDLNTDVDE 399 ***********************************************99889****************************.6999*************** PP GRAS 201 alaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298 +l+Vn ++ +l+des+s ++ +rd+vL+ +++++P+v++ + ++ + ++sFl rf ea+ yy+alfd+++a++prese r ++E+ ++gr++ n++ 462854304 400 VLIVNDLFNFRSLMDESLSFDNqsPRDTVLNNIRKMRPDVFIQSIVNCTY-GSSFLSRFREAMFYYTALFDMFDATMPRESESRLVLEQSWFGRHVLNII 498 ******************9988779*************************.679********************************************** PP GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 acega+ + r e++++W+ r ++aG+k++pl+ ++k k +k+++d ++v e+ ++l++gW++r L++ SaW 462854304 499 ACEGADLVDRPEKYRQWQVRNQRAGLKQLPLKPCIVKVLKDKAKKHHKD-FMVCEDGQWLLQGWMGRILFAHSAW 572 ***********************************************77.************************* PP | |||||||
2 | GRAS | 37 | 5e-12 | 577 | 643 | 306 | 373 |
GRAS 306 rerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 + r e++++W+ r ++aG+k++pl+ +++k k ++k+++d ++v e+ ++l++gW++r L++ SaW 462854304 577 VDRPEKYRQWQVRNQRAGLKQLPLKPDMVKVLKDKVKKHHKD-FMVCEDGQWLLQGWMGRILFAHSAW 643 6899************************************77.************************* PP | |||||||
3 | GRAS | 136.4 | 3e-42 | 825 | 1034 | 155 | 373 |
GRAS 155 keeleetgerLakfAeelgvp.fefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.ns 250 + +eetg++L+ A++lgvp f+f++++a +++d++++ + +++ +++Vn+v++l++l+d+sv+ +P+ v ++ ++ + 462854304 825 ASYIEETGRQLSACARKLGVPfFKFHAIAAANWDDVRVD-VQDDQETVVVVNSVFRLETLVDDSVAGGR-----------PRPRDVGLAAGVVNGfYD 910 66789***************9459****999*****664.44555667899**********99888877...........556666666666666689 PP GRAS 251 esFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sd 347 +sFl rf eal ysa+fd l+a++pr+s++r+++Er +l++ ++n+vaceg++r+ r+ ++++W+ r+++aG++++pl++++++ ++ +++k + + 462854304 911 SSFLSRFREALFNYSAIFDVLDATMPRTSRHRRVLERDVLAPCAMNIVACEGRDRTDRCDSYRQWHLRMQRAGLRQLPLDSDIVAAVRDMVKKQQyHK 1008 9********************************************************************************************99999 PP GRAS 348 gyrveeesgslvlgWkdrpLvsvSaW 373 + ++e++ +l++gWk+r L++ S W 462854304 1009 DFVIDEDRRWLLQGWKGRILYANSTW 1034 9************************* PP | |||||||
4 | GRAS | 297.6 | 3.2e-91 | 1183 | 1551 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 +lL++cA+av+++++ a +lL++++e+as +gd+ qRla++f+++L+arl++++++l l +++ s ++e l+a+k+f ++ + k++ + 462854304 1183 STLLIRCAQAVAANNHVSAIELLKQIKEHASATGDARQRLAQCFAKGLEARLVGTGNQLWTLLMAERPS---VVEFLKAYKMFTAACSFNKVAVIFSV 1277 579********************************************************9988888887...9************************* PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197 +I++a+ g++r+Hi+D+++ +G+QW+ L++ La+ ++g p+l+iT+vg ++ +ee g+rL+k A+e+g+pf+f++++++r+e++++e+L+ + 462854304 1278 MTIMDAIVGKRRLHIVDYGMHYGFQWAGLIRWLAEGNGGRPELKITAVGCSHDMFCPGIEEQGRRLSKCASEFGLPFKFRFITTDRWEKVSIEDLNRE 1375 **************************************************8777999***************************************** PP GRAS 198 pgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgre 293 +E+l+Vn ++ +l+des+ ++ +rd+vL +++++P+v++ + + ++ ++sFl rf eal yy++lfd ++a++prese r +E++l+g + 462854304 1376 GDEVLIVNDLFSFRSLMDESLFFDNpsPRDTVLGNIRKMRPDVFIQSIVNRSY-GSSFLSRFREALFYYTSLFDIFDATMPRESESRLLLEQALFGHR 1472 ********************98777669*****************99999999.679***************************************** PP GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 + n+vacega+ r e++++W+ r ++aGF+++pl+ + + k ++k+++d +++ e+ ++l++gW++r L++ SaW 462854304 1473 VLNIVACEGADLLDRPEKYRQWQVRNQRAGFRQLPLKPGIIQVLKDKVKKHHKD-FMLGEDGQWLLQGWMGRILFAHSAW 1551 ****************************************************77.************************* PP | |||||||
5 | GRAS | 40.4 | 4.3e-13 | 1730 | 1787 | 1 | 57 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselas.pdgdpmqRlaayfteALaarlarsv 57 l++lL++cAe v+++d + a++lLa++ ++as p+gd++qRla++f+ AL+arla+s+ 462854304 1730 LRTLLIRCAEKVKDDDRRGARELLAHITHHASpPSGDATQRLAHCFAAALEARLAGSQ 1787 6789**************************661678*******************955 PP | |||||||
6 | GRAS | 137.4 | 1.6e-42 | 1789 | 2031 | 124 | 374 |
GRAS 124 QWpaLlqaLasRp.egppslRiTgvgspesg..skeeleetgerLakfAeelgvp.fefnvlvakrledleleeLrvkp..gEalaVnlvlqlhrlld 215 Q p+L+ La+ + ++pp++ iTg+++p++g + +eetg++L+ A+elgvp f+f+++++ +++d++ + + + + +l+Vn+v+++++l+d 462854304 1789 QLPPLM--LAAGDgGPPPEVTITGIDHPQPGfrPASYIEETGRQLTACARELGVPcFKFHAIASANWDDVRSFDPEDDDdpETVLVVNSVFRMETLVD 1884 666666..4444437788**************99********************98*****9999***996655544435466789************ PP GRAS 216 esvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhet 311 +sv ++ +rd vL ++++++P v+++ + + ++sFl rf eal yysa+fd l+a++p++ ++r+ +Ere g++r+ r + 462854304 1885 DSVVVDRpsPRDVVLGAIRRMRPAVFTHGVVNGFY-GASFLSRFREALFYYSAMFDVLDATMPST-QHRRALERE-------------GRDRTDRFDS 1967 **87776669********************99999.789**********************9776.566667776.............9********* PP GRAS 312 lekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 +++W+ r+++aG+ ++pl + ++ ++ ++rk + + +++++++l++gWk+r L++ S W+ 462854304 1968 YRQWQLRMQRAGLAQLPLHRDDVAAVRDMVRKQRyHKDFVIDQDRHWLLQGWKGRILYANSTWT 2031 *******************************9998999*************************5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 53.756 | 176 | 554 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.0E-94 | 204 | 572 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.7E-9 | 577 | 643 | IPR005202 | Transcription factor GRAS |
PROSITE profile | PS50985 | 19.511 | 639 | 1014 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.0E-39 | 825 | 1034 | IPR005202 | Transcription factor GRAS |
PROSITE profile | PS50985 | 53.356 | 1156 | 1533 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.1E-88 | 1183 | 1551 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.5E-10 | 1730 | 1787 | IPR005202 | Transcription factor GRAS |
PROSITE profile | PS50985 | 15.096 | 1785 | 2010 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 5.4E-40 | 1789 | 2031 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 2039 aa Download sequence Send to blast |
MVPPSILNMF MEDEIGGELL YQRSNYPALL QVQQPLVQIL SSPSFTTRNY NTGNTEENKD 60 LLPGGSDDQS TLSAPFFKGV DVAGAFLKGV EEAIRFLPSD NNIRRDYLVT EIFSESRNLK 120 AIKKRYNRDN YLEDEARRTR KTMLMMIEEP EEVGIHEILE EMMLRGYETC IKEMEKLQIA 180 LNNEGKSKTR GGSKTTRDVV DLPTLLIHCA QAVAANNHMI AIELLKQIKQ NASTTGDARQ 240 RLAQCFAEGL EARLSGTGNQ LWNLHMAERP SVVEFLKAYK TFMAACCFNK VAVMFSVMTI 300 MDAIVGKKRL HIVDYGMNYG FQWAGLIRWL AERNGGQPEL KITAIACSQH MFCPAQKIKE 360 QGRWLSKCAS EFGLPFKFHS ITTEWEKVSI EDLNTDVDEV LIVNDLFNFR SLMDESLSFD 420 NQSPRDTVLN NIRKMRPDVF IQSIVNCTYG SSFLSRFREA MFYYTALFDM FDATMPRESE 480 SRLVLEQSWF GRHVLNIIAC EGADLVDRPE KYRQWQVRNQ RAGLKQLPLK PCIVKVLKDK 540 AKKHHKDFMV CEDGQWLLQG WMGRILFAHS AWGADLVDRP EKYRQWQVRN QRAGLKQLPL 600 KPDMVKVLKD KVKKHHKDFM VCEDGQWLLQ GWMGRILFAH SAWSLAHIIA SSSSSSVNNG 660 ASTKLYMVDK AHSSVHEGAE VEEAEDNWSN MVNLSFLMGT VEARKLLPST DNSRLVFIAG 720 DVDNVRLMKK DWKGVQNELE AGSRASKLMA TAAPEEEAAV LQEMVKRMML NDCAVSREEM 780 EDLRAAMKDG DGSPLRPTSS KLLQPVVDLR TLLIRCAEKP GFRPASYIEE TGRQLSACAR 840 KLGVPFFKFH AIAAANWDDV RVDVQDDQET VVVVNSVFRL ETLVDDSVAG GRPRPRDVGL 900 AAGVVNGFYD SSFLSRFREA LFNYSAIFDV LDATMPRTSR HRRVLERDVL APCAMNIVAC 960 EGRDRTDRCD SYRQWHLRMQ RAGLRQLPLD SDIVAAVRDM VKKQQYHKDF VIDEDRRWLL 1020 QGWKGRILYA NSTWSNLKGG KDLLLGGSGD QSLLSSPFSD GADVVGAFLK GVEEAIRFLP 1080 RDSRFGRGDL VNEIFRESRN KKRCDRDDYY LEEEVRRTSK SMVMMTEEPK EIGVHEILDE 1140 LMLRGYETYI KEMENLRIAL NNESKKNKPR AGSKAASDVV DLSTLLIRCA QAVAANNHVS 1200 AIELLKQIKE HASATGDARQ RLAQCFAKGL EARLVGTGNQ LWTLLMAERP SVVEFLKAYK 1260 MFTAACSFNK VAVIFSVMTI MDAIVGKRRL HIVDYGMHYG FQWAGLIRWL AEGNGGRPEL 1320 KITAVGCSHD MFCPGIEEQG RRLSKCASEF GLPFKFRFIT TDRWEKVSIE DLNREGDEVL 1380 IVNDLFSFRS LMDESLFFDN PSPRDTVLGN IRKMRPDVFI QSIVNRSYGS SFLSRFREAL 1440 FYYTSLFDIF DATMPRESES RLLLEQALFG HRVLNIVACE GADLLDRPEK YRQWQVRNQR 1500 AGFRQLPLKP GIIQVLKDKV KKHHKDFMLG EDGQWLLQGW MGRILFAHSA WVVAEYISRM 1560 LMEEEEDDRF DQPGLMEAQQ SLAHIIASSS CSSATKPYAA AEVEEAEYNS WSAMVNMSFL 1620 MGTVEARKLL PATTDNILLS GDVDSVRLIQ RSRKGGNIEE LEAGSRARKV MATAAPEEEA 1680 AVLQEMVKGM MLNDCEVSRE EMEYLRGAMT TNDGDGSWPR KVLQPVVVDL RTLLIRCAEK 1740 VKDDDRRGAR ELLAHITHHA SPPSGDATQR LAHCFAAALE ARLAGSQIQL PPLMLAAGDG 1800 GPPPEVTITG IDHPQPGFRP ASYIEETGRQ LTACARELGV PCFKFHAIAS ANWDDVRSFD 1860 PEDDDDPETV LVVNSVFRME TLVDDSVVVD RPSPRDVVLG AIRRMRPAVF THGVVNGFYG 1920 ASFLSRFREA LFYYSAMFDV LDATMPSTQH RRALEREGRD RTDRFDSYRQ WQLRMQRAGL 1980 AQLPLHRDDV AAVRDMVRKQ RYHKDFVIDQ DRHWLLQGWK GRILYANSTW TSVPHHHHP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 4e-33 | 208 | 1552 | 25 | 379 | Protein SCARECROW |
5b3h_A | 4e-33 | 208 | 1552 | 24 | 378 | Protein SCARECROW |
5b3h_D | 4e-33 | 208 | 1552 | 24 | 378 | Protein SCARECROW |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462854304 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004978278.1 | 0.0 | scarecrow-like protein 33 | ||||
TrEMBL | A0A3L6Q265 | 0.0 | A0A3L6Q265_PANMI; GRAS transcription factor | ||||
STRING | Pavir.Hb00038.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP231 | 31 | 297 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G29060.1 | 1e-109 | GRAS family protein |