PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 462853751 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 199aa MW: 22046.3 Da PI: 6.9627 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 69.6 | 4.8e-22 | 96 | 158 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elk+++rkq+NRe+ArrsR+RK+ae+eeL +++++L +eN++L+ ele+++ke+++l s++ 462853751 96 ERELKKQKRKQSNRESARRSRLRKQAECEELGQRAESLRSENSSLRAELERIRKEYEQLLSQN 158 89**********************************************************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07777 | 2.9E-12 | 6 | 52 | IPR012900 | G-box binding protein, multifunctional mosaic region |
Gene3D | G3DSA:1.20.5.170 | 5.9E-17 | 92 | 157 | No hit | No description |
Pfam | PF00170 | 2.4E-20 | 96 | 158 | IPR004827 | Basic-leucine zipper domain |
SMART | SM00338 | 7.2E-21 | 96 | 160 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 13.288 | 98 | 161 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 3.19E-11 | 99 | 156 | No hit | No description |
CDD | cd14702 | 8.87E-23 | 101 | 151 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 103 | 118 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 199 aa Download sequence Send to blast |
MDQPPATTSG TTASVYPEWP SFQAYSTMPP HGFFPPPVAA NPQAHPYMWG AQFSKWHILF 60 SITGNGMDYW AAPGSAAVPA MHGKAPAGSA RDQWDERELK KQKRKQSNRE SARRSRLRKQ 120 AECEELGQRA ESLRSENSSL RAELERIRKE YEQLLSQNAS LKERLGGASD SVPDMNEQND 180 GDGSSKKQPD SDAQPGSEP |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 112 | 118 | RRSRLRK |
2 | 112 | 119 | RRSRLRKQ |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 462853751 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008645200.1 | 3e-76 | transcription factor HBP-1a isoform X1 | ||||
Refseq | XP_008645201.1 | 3e-76 | transcription factor HBP-1a isoform X2 | ||||
Swissprot | P23922 | 7e-54 | HBP1A_WHEAT; Transcription factor HBP-1a | ||||
TrEMBL | A0A060CYY6 | 7e-76 | A0A060CYY6_MAIZE; BZIP transcription factor (Fragment) | ||||
STRING | Pavir.Ab00132.1.p | 3e-76 | (Panicum virgatum) | ||||
STRING | GRMZM2G153144_P01 | 1e-75 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2147 | 37 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G35530.1 | 8e-36 | basic region/leucine zipper transcription factor 16 |
Publications ? help Back to Top | |||
---|---|---|---|
|