PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462851533

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

GRAS

Protein Properties

Length: 364aa MW: 39836.1 Da PI: 8.769

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462851533	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	20.7	4.2e-07	181	215	2	36
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgd 36 +lLlecA+av+++d +++q+l++ l+elasp+gd 462851533 181 SQLLLECARAVAAHDSQRVQQLMWMLNELASPYGD 215 589******************************98 PP
2	GRAS	84.7	1.5e-26	215	328	110	219
GRAS 110 ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak.rledleleeLrvkp....gEala 203 +r Hi+D++ + ++QWp+Ll+aLa+R+ +++p+l +T+v++++ +++ ++e+++rL+kfA+ +gvpf f+v+++ +l+dl+l++L + + + ala 462851533 215 DRFHILDLSNTFCTQWPTLLEALATRSaDDTPHLSVTTVVPAA--QQRVMREVAQRLEKFARLMGVPFAFRVVHHAgDLADLDLDALGLFRdattNAALA 312 578**********************889*******55..***********************97767******8888777799* PP GRAS 204 Vnlvlqlhrlldesvs 219 Vn+v + r ++s++ 462851533 313 VNCVGAGTRSSRRSAA 328 ****988887765554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	13.194	205	364	IPR005202	Transcription factor GRAS
Pfam	PF03514	5.3E-24	215	328	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence Send to blast
MDTLFRLVSL HHHHQQQQQQ PQAAAPYPSP DQLHHHQQQS PYYSSSSRSS TGSPSASTPH 60 NNNYYYYSNS NYSYYPCSSA GGTGGGYYFQ EQQTATTHLH EECGNEHRLL LLVLVPAVPV 120 QVPATTSTPP ASTSSTQHGL FEAADFSFPS VDIDLDFSSG GSPAGGTGAS ASPSGTGRWA 180 SQLLLECARA VAAHDSQRVQ QLMWMLNELA SPYGDRFHIL DLSNTFCTQW PTLLEALATR 240 SADDTPHLSV TTVVPAAQQR VMREVAQRLE KFARLMGVPF AFRVVHHAGD LADLDLDALG 300 LFRDATTNAA LAVNCVGAGT RSSRRSAASS RAWSPSSRRR PTSCRTLRRR RPPVRTPQTT 360 RRRS

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence Send to blast

MDTLFRLVSL HHHHQQQQQQ PQAAAPYPSP DQLHHHQQQS PYYSSSSRSS TGSPSASTPH  60
NNNYYYYSNS NYSYYPCSSA GGTGGGYYFQ EQQTATTHLH EECGNEHRLL LLVLVPAVPV  120
QVPATTSTPP ASTSSTQHGL FEAADFSFPS VDIDLDFSSG GSPAGGTGAS ASPSGTGRWA  180
SQLLLECARA VAAHDSQRVQ QLMWMLNELA SPYGDRFHIL DLSNTFCTQW PTLLEALATR  240
SADDTPHLSV TTVVPAAQQR VMREVAQRLE KFARLMGVPF AFRVVHHAGD LADLDLDALG  300
LFRDATTNAA LAVNCVGAGT RSSRRSAASS RAWSPSSRRR PTSCRTLRRR RPPVRTPQTT  360
RRRS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_B	3e-35	216	356	199	331	Protein SHORT-ROOT
5b3h_B	1e-35	216	356	145	277	Protein SHORT-ROOT
5b3h_E	1e-35	216	356	145	277	Protein SHORT-ROOT
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor required for the asymmetric cell division involved in radial pattern formation in roots. Essential for both cell division and cell specification (By similarity). {ECO:0000250}.
UniProt	Transcription factor required for the asymmetric cell division involved in radial pattern formation in roots. Essential for both cell division and cell specification. {ECO:0000269\|PubMed:17446396}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462851533

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT086069	1e-42	BT086069.2 Zea mays full-length cDNA clone ZM_BFc0110J05 mRNA, complete cds.
GenBank	KJ727015	1e-42	KJ727015.1 Zea mays clone pUT3996 GRAS transcription factor (GRAS58) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025796633.1	9e-47	protein SHORT-ROOT 2-like
Swissprot	A2YN56	5e-44	SHR1_ORYSI; Protein SHORT-ROOT 1
Swissprot	Q8H2X8	5e-44	SHR1_ORYSJ; Protein SHORT-ROOT 1
TrEMBL	A0A3L6TJ52	9e-46	A0A3L6TJ52_PANMI; Protein SHORT-ROOT 2-like
STRING	OB03G31410.1	1e-45	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3526	37	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37650.1	5e-29	GRAS family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]