PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462851139
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB
Protein Properties Length: 235aa    MW: 26471.1 Da    PI: 8.163
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462851139genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.11.6e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+eEd++l+  +  +G  +W+++++  g+ R++k+c++rw +yl
        462851139 14 RGPWTAEEDKKLISFILTHGRCCWRAVPKLAGLLRCGKSCRLRWTNYL 61
                     89******************************99************97 PP
2Myb_DNA-binding54.62.5e-1769111347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        Tt E+++ +d++++lG++ W++Ia++++ gRt++++k++w+++
        462851139  69 LLTTAEEQIVIDLHAKLGNR-WSKIAAKLP-GRTDNEIKNHWNTH 111
                      569*****************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.0E-22562IPR009057Homeodomain-like
PROSITE profilePS5129414.274961IPR017930Myb domain
SuperFamilySSF466892.16E-2711108IPR009057Homeodomain-like
SMARTSM007174.2E-131363IPR001005SANT/Myb domain
PfamPF002492.4E-151461IPR001005SANT/Myb domain
CDDcd001673.23E-101661No hitNo description
PROSITE profilePS5129427.52162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.6E-2563117IPR009057Homeodomain-like
SMARTSM007175.6E-1566114IPR001005SANT/Myb domain
PfamPF002497.3E-1570111IPR001005SANT/Myb domain
CDDcd001671.10E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MGRQPCCDKQ GVKRGPWTAE EDKKLISFIL THGRCCWRAV PKLAGLLRCG KSCRLRWTNY  60
LRPDLKRGLL TTAEEQIVID LHAKLGNRWS KIAAKLPGRT DNEIKNHWNT HIKKKLIKMG  120
IDPATHQPLA KSNKATSQST VTIESAKSSD SGDAQSLKEC SQETMQILTD SYEQSSQAEQ  180
SSNNCSHDLD QMVNCRLEVD LPIDEPWLNF TSRSHDELGI VTDPLPWDAN SHLLI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-29141167108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtR2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development. {ECO:0000269|PubMed:15805488}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462851139
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Increases before the onset of volatile emission at the end of the light period, peaks at night and decreases when volatile emission declines early morning.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820510.11e-132protein ODORANT1-like
RefseqXP_025820511.11e-132protein ODORANT1-like
RefseqXP_025820512.11e-132protein ODORANT1-like
RefseqXP_025820514.11e-132protein ODORANT1-like
RefseqXP_025820515.11e-132protein ODORANT1-like
RefseqXP_025820516.11e-132protein ODORANT1-like
RefseqXP_025820517.11e-132protein ODORANT1-like
RefseqXP_025820518.11e-132protein ODORANT1-like
RefseqXP_025820519.11e-132protein ODORANT1-like
RefseqXP_025820520.11e-132protein ODORANT1-like
RefseqXP_025820521.11e-132protein ODORANT1-like
RefseqXP_025820522.11e-132protein ODORANT1-like
RefseqXP_025820523.11e-132protein ODORANT1-like
SwissprotQ50EX66e-88ODO1_PETHY; Protein ODORANT1
TrEMBLA0A3L6PP211e-131A0A3L6PP21_PANMI; Protein ODORANT1-like
STRINGPavir.Fb02321.1.p1e-129(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12350.13e-84myb domain protein 42
Publications ? help Back to Top
  1. Verdonk JC,Haring MA,van Tunen AJ,Schuurink RC
    ODORANT1 regulates fragrance biosynthesis in petunia flowers.
    Plant Cell, 2005. 17(5): p. 1612-24
    [PMID:15805488]