PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462850189 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | WRKY | ||||||||
Protein Properties | Length: 239aa MW: 25716.5 Da PI: 7.8594 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 87.9 | 8.5e-28 | 119 | 179 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 dDg++WrKYGqK++ g++fpr+YYrCt++ +Cp++k+v+rs++d v+++tY+g+H+++ 462850189 119 DDGFSWRKYGQKDILGAKFPRGYYRCTYRasqSCPATKQVQRSDSDLCVFDVTYQGHHTCH 179 8**************************998899**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.4E-27 | 111 | 180 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 22.102 | 113 | 176 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.7E-24 | 117 | 180 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.8E-38 | 118 | 180 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.1E-26 | 119 | 179 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MQDGSAGGGD GSIHLLLSIL ADGEEQARLL GELPDDPRLG AERYRGAARM LQCTLGKAAI 60 EAAPSRAADS PRSADEGSGG TSAAVEAQDR PGVCKRRKGL PRWTAKFRVP DANLEATPDD 120 GFSWRKYGQK DILGAKFPRG YYRCTYRASQ SCPATKQVQR SDSDLCVFDV TYQGHHTCHQ 180 KQRHAAAAAS ELGEVVSRAT TTTAASAVAD RGSDYSLYYQ YHAEFDPHLP FAPSGGARH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 1e-19 | 120 | 177 | 18 | 75 | Disease resistance protein RRS1 |
5w3x_D | 1e-19 | 120 | 177 | 18 | 75 | Disease resistance protein RRS1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:20409006). May regulate the early events of leaf senescence (PubMed:17369373, PubMed:20409006). Negatively regulates the expression of ESR/ESP (PubMed:20409006). Together with WRKY46 and WRKY70, promotes resistance to P.syringae, probably by enhancing salicylic acid (SA)- dependent genes. Contributes to the suppression of jasmonic acid (MeJA)-induced expression of PDF1.2 (PubMed:22325892). {ECO:0000269|PubMed:17369373, ECO:0000269|PubMed:20409006, ECO:0000269|PubMed:22325892}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462850189 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA) (PubMed:22268143, PubMed:22325892). Strong accumulation during leaf senescence (PubMed:22268143). Down-regulated by jasmonate. Triggered by P.syringae (PubMed:22325892). {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11506370, ECO:0000269|PubMed:17369373, ECO:0000269|PubMed:22268143, ECO:0000269|PubMed:22325892}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP097604 | 2e-31 | FP097604.1 Phyllostachys edulis cDNA clone: bphyem209j21, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025811264.1 | 8e-92 | probable WRKY transcription factor 53 | ||||
Swissprot | Q9SUP6 | 2e-38 | WRK53_ARATH; Probable WRKY transcription factor 53 | ||||
TrEMBL | A0A1E5W0A1 | 2e-93 | A0A1E5W0A1_9POAL; Putative WRKY transcription factor 53 | ||||
STRING | Pavir.Da02163.1.p | 1e-90 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13340 | 27 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23810.1 | 8e-39 | WRKY family protein |