PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462848976
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB_related
Protein Properties Length: 278aa    MW: 30473.8 Da    PI: 5.1069
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462848976genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.44.5e-101455148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W+++Ed++l      +G ++W++ ++  g+ R++k+c++rw +yl
        462848976 14 RGAWSADEDQRL------HGHPNWRALPKQAGLLRCGKSCRLRWINYL 55
                     899*******97......**************99************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.1E-17558IPR009057Homeodomain-like
PROSITE profilePS5129416.775959IPR017930Myb domain
SMARTSM007179.0E-51357IPR001005SANT/Myb domain
PfamPF002499.1E-81455IPR001005SANT/Myb domain
SuperFamilySSF466891.11E-171582IPR009057Homeodomain-like
CDDcd001671.39E-61655No hitNo description
PROSITE profilePS500905.18156111IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.5E-85982IPR009057Homeodomain-like
SMARTSM007177.960110IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MGRAPCCEKE GLRRGAWSAD EDQRLHGHPN WRALPKQAGL LRCGKSCRLR WINYLRPDIK  60
RGNFTADEED QIVRLHQELG NRIFLNCSVR RVPGAQCSQL NVMWQQVVRD RRAAAGAHRQ  120
RDQERVAHPP QEEAASKKQP RKSKPAKNAA KEDDADGDGD APSSFTAPSP GLSSSVSSGV  180
TCSTATESTA AVSSADNAAT TSASQPGVKT EEMESFSTAE FPPIDESFWT SADVMDMDLG  240
AMDEELGLAS SASTRDEDME FWLKMLLESG DMRDLSAM
Cis-element ? help Back to Top
SourceLink
PlantRegMap462848976
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0837683e-55BT083768.1 Zea mays full-length cDNA clone ZM_BFb0037L06 mRNA, complete cds.
GenBankBT0882233e-55BT088223.2 Zea mays full-length cDNA clone ZM_BFc0078D15 mRNA, complete cds.
GenBankKJ7268983e-55KJ726898.1 Zea mays clone pUT3443 MYB transcription factor (MYB121) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982863.11e-102transcription factor MYB4
TrEMBLA0A0A9HAP11e-107A0A0A9HAP1_ARUDO; Myb39
STRINGPavir.J09313.1.p1e-102(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.11e-46myb domain protein 15