PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462848579 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | bHLH | ||||||||
Protein Properties | Length: 182aa MW: 19768.8 Da PI: 10.5116 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 15.5 | 3.1e-05 | 72 | 106 | 15 | 54 |
HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ ++ L++l+ + +K + a++L +A+eYIk L 462848579 72 KLGDRVTALQQLVSPF-----GKTDTASVLHEAIEYIKFL 106 5556666777777776.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.611 | 57 | 106 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.92E-5 | 67 | 111 | No hit | No description |
SuperFamily | SSF47459 | 1.57E-11 | 67 | 124 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.0E-8 | 71 | 114 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MMKPPFPQQQ QPILSQALVE SKRLKADIGG VQEACSSVTR RSSVPDSPAV AAKRPRIETP 60 TPLPTFKVRK EKLGDRVTAL QQLVSPFGKT DTASVLHEAI EYIKFLHDQV ASLTSPYLRC 120 GRPVQPQKQQ GSSKAKDLRS RGLCLVPVAS TYTVANDDAG VLAPNIWGHV SVEKLGGTTR 180 KS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462848579 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT837834 | 6e-71 | CT837834.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA129D11, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025806482.1 | 7e-65 | transcription factor bHLH112-like isoform X2 | ||||
Swissprot | Q94JL3 | 2e-40 | BH112_ARATH; Transcription factor bHLH112 | ||||
TrEMBL | A0A2T7EBW8 | 1e-63 | A0A2T7EBW8_9POAL; Uncharacterized protein | ||||
STRING | Si022548m | 2e-63 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2970 | 34 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61660.1 | 3e-43 | bHLH family protein |
Publications ? help Back to Top | |||
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