PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462845408 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | WRKY | ||||||||
Protein Properties | Length: 311aa MW: 32286.2 Da PI: 6.7818 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 104 | 8e-33 | 140 | 197 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsYYrCt ++C+vkk+vers++dp+vv++tYeg+H h+ 462845408 140 EDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCSVKKRVERSSNDPSVVITTYEGQHCHH 197 8******************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 8.2E-34 | 124 | 198 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.01E-28 | 131 | 197 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.792 | 134 | 199 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.5E-38 | 139 | 198 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.0E-26 | 140 | 197 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence Send to blast |
MAGAGGEGGG GGEWPFSADA YADSSAIFAE LGCWAAGLDG ACGELLPPLD PAPEATPPPR 60 ACGGAAEEAV ATPAGSVSVD GGASSSSTDD GAAQEDADVK PAAATEAASK PPAPGKTKGQ 120 KRARQPRFAF MTKSEIDHLE DGYRWRKYGQ KAVKNSPFPR SYYRCTNSKC SVKKRVERSS 180 NDPSVVITTY EGQHCHHTVT FPRAHLHAIA GHMAFSAHHL YDHLPPLQLP PANALDPLTC 240 RPAAMPSSSP SPSSLLRPLH CNQELQAAAS MYPLSATATM AAPAVSTPAS AVPAVDKGLL 300 DDMVPPAMRH A |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 4e-26 | 129 | 196 | 7 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 4e-26 | 129 | 196 | 7 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00067 | PBM | Transfer from AT1G69310 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462845408 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KU058608 | 2e-84 | KU058608.1 UNVERIFIED: Panicum miliaceum WRKY8-like gene, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020149447.1 | 1e-110 | probable WRKY transcription factor 57 | ||||
TrEMBL | A0A1E5VGB7 | 1e-118 | A0A1E5VGB7_9POAL; Putative WRKY transcription factor 57 | ||||
TrEMBL | A0A3B6C5U0 | 1e-118 | A0A3B6C5U0_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446M9N7 | 1e-118 | A0A446M9N7_TRITD; Uncharacterized protein | ||||
STRING | Pavir.Bb00073.1.p | 1e-126 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2125 | 37 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69310.2 | 2e-53 | WRKY DNA-binding protein 57 |