PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462845378

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

NAC

Protein Properties

Length: 300aa MW: 33899.2 Da PI: 9.4564

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462845378	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	144.4	6.4e-45	12	143	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkya....tgkrknratksgyWkatgkdkevlsk.. 95 pGfrFhPt+eel+ +yLk+ v+gkkl++ ++i++v++y++ePw+Lp + +e+ewyfF++r + + +++r++r+t++g+Wkatg+d++v ++ 462845378 12 PGFRFHPTEEELLEFYLKQVVQGKKLKF-DIIPRVQLYRHEPWELPgLARIVGEREWYFFVPRGDHRPpkqqQQQRPSRTTERGFWKATGSDRAVRCAad 110 9************************9.99***********533335789**987655443337889999*************9877 PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++l+glkktLv+y+grap+g+ktdWvm+eyrl 462845378 111 PKRLIGLKKTLVYYEGRAPRGTKTDWVMNEYRL 143 7788*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	51.663	10	182	IPR003441	NAC domain
SuperFamily	SSF101941	7.45E-51	11	182	IPR003441	NAC domain
Pfam	PF02365	6.2E-24	12	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MEGRGAAELE LPGFRFHPTE EELLEFYLKQ VVQGKKLKFD IIPRVQLYRH EPWELPGLAR 60 IVGEREWYFF VPRGDHRPPK QQQQQRPSRT TERGFWKATG SDRAVRCAAD PKRLIGLKKT 120 LVYYEGRAPR GTKTDWVMNE YRLPDKNNNN NNNNNASSSS SSSSSSSSPK DQDMVLCKIY 180 RKAVSLKELE QRVAMEELAR ATATPSSAST GDSSSSSSEH GGGDLQLGSR PCVMKKEETT 240 TSAATVMRPA TLSLPQLEVA RPPPSQQLLG AEWMQDPFLT QLRSPWMETW SPYYASVLNF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	6e-41	7	182	11	168	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269\|PubMed:26834774}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462845378

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269\|PubMed:26834774}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002439057.1	1e-142	NAC domain-containing protein 67
Swissprot	Q10S65	3e-94	NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBL	A0A194YLW2	1e-140	A0A194YLW2_SORBI; Uncharacterized protein
STRING	Sb10g030770.1	1e-141	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1770	38	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17040.1	2e-70	NAC domain containing protein 36

Publications ? help Back to Top
Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774]