PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10029188m
Common NameEUTSA_v10029188mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family NAC
Protein Properties Length: 222aa    MW: 25825.1 Da    PI: 6.5154
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10029188mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM79.38.6e-25101423128
              NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLp..kkvkaeekewyfFskrdkkya....tgkrknr.atksgyWkatgk 88 
                      pG+rF+P+d +lv + L +++ ++kl+    ++++ ++y+ ePw L+  ++vk +e+ew++F++r+++       +kr++r ++ sg+Wk+tg+
  Thhalv10029188m  10 PGMRFDPSDLQLV-NILGRRIYNNKLSR--YVTDIhNLYEQEPWLLHhvRHVKFKENEWFYFVTRKQHPGtkktDSKRPSRkVAGSGRWKTTGS 100
                      9************.78999999999777..5666669*********84347778999***9999988655222145688886788********* PP

              NAM  89 dkevlskkgelvglkktLvfy...kgrapkgektdWvmheyrl 128
                       +++ + +g +vg+ + ++f    ++++++   t Wvmhey l
  Thhalv10029188m 101 LTHIEK-EGVEVGTMQHITFKansEAEEEDEITTGWVMHEYVL 142
                      ****99.9999**********654456666679********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100530.5258158IPR003441NAC domain
SuperFamilySSF1019414.05E-298157IPR003441NAC domain
PfamPF023651.8E-1410142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MTKIRRSQIP GMRFDPSDLQ LVNILGRRIY NNKLSRYVTD IHNLYEQEPW LLHHVRHVKF  60
KENEWFYFVT RKQHPGTKKT DSKRPSRKVA GSGRWKTTGS LTHIEKEGVE VGTMQHITFK  120
ANSEAEEEDE ITTGWVMHEY VLNKPGFQEV VLCRIRFYPG EDNAQYAPRL EPIMIGLERE  180
DGLENNLQNH MIGINNGVAD AAFEDIQQYL DVPVETIDYD H*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-171016519170NO APICAL MERISTEM PROTEIN
1ut4_B3e-171016519170NO APICAL MERISTEM PROTEIN
1ut7_A3e-171016519170NO APICAL MERISTEM PROTEIN
1ut7_B3e-171016519170NO APICAL MERISTEM PROTEIN
3swm_A3e-171016522173NAC domain-containing protein 19
3swm_B3e-171016522173NAC domain-containing protein 19
3swm_C3e-171016522173NAC domain-containing protein 19
3swm_D3e-171016522173NAC domain-containing protein 19
3swp_A3e-171016522173NAC domain-containing protein 19
3swp_B3e-171016522173NAC domain-containing protein 19
3swp_C3e-171016522173NAC domain-containing protein 19
3swp_D3e-171016522173NAC domain-containing protein 19
4dul_A3e-171016519170NAC domain-containing protein 19
4dul_B3e-171016519170NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10029188m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006396369.11e-167NAC domain-containing protein 40
TrEMBLV4L6891e-165V4L689_EUTSA; Uncharacterized protein
STRINGXP_006396369.11e-166(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM144241018
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15500.13e-18NAC domain containing protein 3