PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10028815m
Common NameEUTSA_v10028815mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family bHLH
Protein Properties Length: 317aa    MW: 35337.7 Da    PI: 5.5062
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10028815mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.82.2e-14113164155
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +r++h ++Er+RR+++N+ ++ Lr+l+P++     ++ + a+i+  A+++Ik+L+
  Thhalv10028815m 113 QRMTHIAVERNRRRQMNEHLNSLRSLMPPS---FLQRGDQASIVGGAIDFIKELE 164
                      79***************************9...89*****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.04E-12111168No hitNo description
SuperFamilySSF474596.54E-16111179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.72112163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-13113175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.6E-12113164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.9E-11118169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MERVMSFGGL EDQFAQISET EIDEKIPFLQ MLQCIEPIAF STTEPNQILQ SLLQIQTLEP  60
ESCLTHETIK RDPGQTDDPV KDPKTENGAA TVKEKRKRKR TRAPKNKDEV ENQRMTHIAV  120
ERNRRRQMNE HLNSLRSLMP PSFLQRGDQA SIVGGAIDFI KELEQLSQTL EAEKQNEGAS  180
ENPKTASSSS SSSRACTNSS VSSVSTTSED GFTARFGGGE TAEVEATVIQ NHVSLKVRCK  240
RRKGQILRAI VSIEDLKLSI LHLTISSSFD YVFYSFNLKI EDECKIGGSA DEIATAVHQI  300
FEQINGEIMW SNLSRT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113124RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10028815m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3531010.0AK353101.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-16-P03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006396347.10.0transcription factor bHLH57
SwissprotQ9M1281e-174BH057_ARATH; Transcription factor bHLH57
TrEMBLE4MX540.0E4MX54_EUTHA; mRNA, clone: RTFL01-16-P03
TrEMBLV4KIY20.0V4KIY2_EUTSA; Uncharacterized protein
STRINGXP_006396347.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM146961721
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01460.11e-154bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]