PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10028723m
Common NameEUTSA_v10028723mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C2H2
Protein Properties Length: 388aa    MW: 44888 Da    PI: 6.7585
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10028723mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.001581103323
                      ET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                      C+   Cgk+F + s L++H   H
  Thhalv10028723m  81 CSyeGCGKTFFDVSALRKHSHIH 103
                      77779**************7766 PP
2zf-C2H213.60.0002108132123
                      EEET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                      y+C+   C k F ++s LkrH   H
  Thhalv10028723m 108 YVCHyiGCEKKFLDSSKLKRHFLIH 132
                      9********************8877 PP
3zf-C2H220.41.3e-06138162123
                      EEET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                      ++C+   Cgk Fs   nL++H++tH
  Thhalv10028723m 138 FVCTyeGCGKAFSLDFNLRSHMKTH 162
                      89**********************9 PP
4zf-C2H213.40.00022168193123
                      EEET..TTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                      + Cp   Cgk++ + + Lk+H    H
  Thhalv10028723m 168 HICPysGCGKRYAHEYKLKNHVAAyH 193
                      68*******************87666 PP
5zf-C2H212.90.00033231256123
                      EEET..TTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                      y Cp   C k + + + Lk H+++ H
  Thhalv10028723m 231 YACPyeGCEKAYIHEYKLKLHLKReH 256
                      89*********************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.4E-1474105IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.94979108IPR007087Zinc finger, C2H2
SMARTSM003550.006479103IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028081103IPR007087Zinc finger, C2H2
SuperFamilySSF576671.63E-782132No hitNo description
Gene3DG3DSA:3.30.160.601.2E-12106128IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.154108137IPR007087Zinc finger, C2H2
SMARTSM003550.012108132IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280110132IPR007087Zinc finger, C2H2
SuperFamilySSF576673.15E-14119173No hitNo description
Gene3DG3DSA:3.30.160.602.7E-19129164IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.757138167IPR007087Zinc finger, C2H2
SMARTSM003557.2E-4138162IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280140162IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.7E-7165189IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0074168193IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280170193IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.3E-8228253IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.6E-5229253No hitNo description
PROSITE profilePS501579.328231261IPR007087Zinc finger, C2H2
SMARTSM003550.012231256IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280233256IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MEHQQYPYHN PFERRPILKS KAPAVRWIKE WVPQDIVATG GKCYLRKWVT EETVKRLKEK  60
EKEPEVPVPE PEPTTEVLFL CSYEGCGKTF FDVSALRKHS HIHGERQYVC HYIGCEKKFL  120
DSSKLKRHFL IHTGARDFVC TYEGCGKAFS LDFNLRSHMK THSQENYHIC PYSGCGKRYA  180
HEYKLKNHVA AYHEKNVAGD TPKYTPPAEK VSRTVKTPAA VYGSVSLDRP YACPYEGCEK  240
AYIHEYKLKL HLKREHPGHL QEENSENPTP NKHNGCDRND LEEVSDQDFY RKNAINAKSQ  300
IHKQQSRAKP NMRTPPAKAG KKGSTSSPAK GSITKKPWQV KDMFEEGERE EEEDSEETEE  360
DRENVDDGWR FGENNEDDDD EETEYED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C6e-35811928117PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10028723m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006397365.10.0zinc finger transcription factor YY1
SwissprotQ2V3L30.0YY1_ARATH; Zinc finger transcription factor YY1
TrEMBLV4LGA90.0V4LGA9_EUTSA; Uncharacterized protein
STRINGXP_006397365.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58592846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.10.0C2H2 family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]
  3. Wu XY,Li T
    A Casein Kinase II Phosphorylation Site in AtYY1 Affects Its Activity, Stability, and Function in the ABA Response.
    Front Plant Sci, 2017. 8: p. 323
    [PMID:28348572]