PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10028592m | ||||||||
Common Name | EUTSA_v10028592mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | HB-other | ||||||||
Protein Properties | Length: 507aa MW: 56519.1 Da PI: 9.5935 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59 | 7.5e-19 | 19 | 74 | 2 | 57 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +kR t+ q+ +Le+++++++yps+e++++LA++++Lte+qV+ WF+ rR k+k+ Thhalv10028592m 19 KKRKLKTPIQIMALENFYNEHKYPSEEMKAQLAEEIELTEKQVSGWFCHRRLKDKR 74 8999**************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-19 | 8 | 74 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.56E-17 | 15 | 77 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.665 | 15 | 75 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.8E-19 | 17 | 79 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.9E-16 | 19 | 74 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.84E-17 | 19 | 75 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 507 aa Download sequence Send to blast |
MLSGEVPADG DKTSAENSKK RKLKTPIQIM ALENFYNEHK YPSEEMKAQL AEEIELTEKQ 60 VSGWFCHRRL KDKRSVKEDG NTIGSQDRSS VVLQDRGSGL RQDSCGSTKQ TDYSNPKPRE 120 VESQRLYGGS YMGNAGGEDS TSSERSSSLH KILVSSKDGV RDVESLRYVA RSDVVQHPLV 180 MKSYGYNKPS GYLKLKGETE NVAITAVKRQ LGRQYREDGP PLGVEFDPLP PGAFEPQTNI 240 IVHEPIYVGN QRRSQPPYLT GTKKSINPGS SYELTRKSKM HSPDPYSEDD DDGDDNMMVG 300 MEPGLRDKQR IREPRLKPPS LGYSNPVSGH KPFKETFKGS VREIPLTNIK KSRISAKSRP 360 EGSRNHLIPN FHNLSGRDIE TNQTHDYDKN IFNGGRKSGH LTESSKLLPL SSSRSPDSVE 420 RGLSSGMVGK YYGERNHMKM HREKLHSTDE PPVTKRLKHG YLQQVYAPKS SNSEILGRKG 480 QIIRSGVELP SSFSGDETAE SSSSMD* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10028592m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006396554.1 | 0.0 | uncharacterized protein LOC18014314 | ||||
TrEMBL | V4L6S2 | 0.0 | V4L6S2_EUTSA; Uncharacterized protein | ||||
STRING | XP_006396554.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12202 | 25 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G03250.1 | 0.0 | HB-other family protein |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10028592m |
Entrez Gene | 18014314 |