PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10028213m
Common NameEUTSA_v10028213mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family WRKY
Protein Properties Length: 184aa    MW: 21308.1 Da    PI: 9.4667
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10028213mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.98.9e-33101159159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+vk++ +prsYYrCt+++C+vkk+v+r a+dp+vv++tYeg Hnh+
  Thhalv10028213m 101 LDDGYRWRKYGQKSVKNNAHPRSYYRCTYHTCNVKKQVQRLAKDPNVVVTTYEGIHNHP 159
                      59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.7E-3388159IPR003657WRKY domain
SuperFamilySSF1182908.11E-2993160IPR003657WRKY domain
PROSITE profilePS5081129.17296161IPR003657WRKY domain
SMARTSM007743.3E-38101160IPR003657WRKY domain
PfamPF031063.2E-26102159IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MERQDINSML SLDVENSNTS YTTFSSFVDK TLMMMPPLTY SNEVLEPSSS PFSWYPTSLH  60
VHAPPPENDQ KGEKGKKKDK EKRSRKVPRI AFQTRSDDDV LDDGYRWRKY GQKSVKNNAH  120
PRSYYRCTYH TCNVKKQVQR LAKDPNVVVT TYEGIHNHPC EKLMETLNPL LRQLQFLSSF  180
SNL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-2791158774Probable WRKY transcription factor 4
2lex_A3e-2791158774Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00539DAPTransfer from AT5G41570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10028213m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4048641e-144AF404864.1 Arabidopsis thaliana WRKY transcription factor 24 (WRKY24) mRNA, complete cds.
GenBankAK2275221e-144AK227522.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-13-N18.
GenBankBT0045951e-144BT004595.1 Arabidopsis thaliana At5g41570 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006405331.11e-136probable WRKY transcription factor 24
SwissprotQ9FFS31e-105WRK24_ARATH; Probable WRKY transcription factor 24
TrEMBLV4LSI91e-135V4LSI9_EUTSA; Uncharacterized protein
STRINGXP_006405331.11e-136(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50928154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41570.17e-79WRKY DNA-binding protein 24