PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10028073m

Common Name

EUTSA_v10028073mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

TCP

Protein Properties

Length: 238aa MW: 26121.9 Da PI: 9.0235

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10028073m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	104.3	1.9e-32	57	132	2	74
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...e 74 ++k++++++h kv+gR+RRvRl+ +caar+F+L++eLG+++d++t++WLl a+p+i+ +tg++ ++ +++ Thhalv10028073m 57 SVQKKPSKDRHLKVEGRGRRVRLPPLCAARIFQLTRELGHKSDGETLQWLLHHAEPSIISATGSGIKPTTDSvsqP 132 579*************************************************************777764443221 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	24.88	63	117	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	3.6E-25	63	127	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MMDPKNPNQP QVPNFPNPSP QNQDNEKTAK ETDFKGFNTV EGKRKWKKNH KENEEQSVQK 60 KPSKDRHLKV EGRGRRVRLP PLCAARIFQL TRELGHKSDG ETLQWLLHHA EPSIISATGS 120 GIKPTTDSVS QPPLTADLSL KGAPRSQIAN GFWPNETGFD GGANASTAGG FDLNYGIGFL 180 GFDFNGSSGM GYENNQMSQD GTVGVLNPQI YPQFALQQAK AHHHNLQHEA QQEKNGS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10028073m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006405404.1	1e-177	transcription factor TCP6
Swissprot	Q9FLM6	6e-79	TCP6_ARATH; Transcription factor TCP6
TrEMBL	V4LWE9	1e-176	V4LWE9_EUTSA; Uncharacterized protein
STRING	XP_006405404.1	1e-176	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15743	14	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41030.1	1e-72	TCP family protein

Link Out ? help Back to Top
Phytozome	Thhalv10028073m
Entrez Gene	18022977

Publications ? help Back to Top
Sanz-Fernández M, et al. Screening Arabidopsis mutants in genes useful for phytoremediation. J. Hazard. Mater., 2017. 335: p. 143-151 [PMID:28441590]