PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10027563m
Common NameEUTSA_v10027563mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family B3
Protein Properties Length: 323aa    MW: 36905.2 Da    PI: 10.3438
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10027563mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.39.2e-16389297
                     EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3  2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
                     f++ t+ ++l+s  l +p kf+++h  g ++++  t  +++    ++W+vk+  ++++    lt+GWkeF  a++L+ gD+v+F+++g+  f  +v
  Thhalv10027563m  3 FQASTTTSYLTS--LNIPLKFFSKHiqGRNERN--TAEVRSdACKNTWKVKM--EGRR----LTDGWKEFTIAHDLRIGDIVIFRHEGDLVF--HV 86
                     444444444444..66*********96555555..5555553888*******..8888....***********************8876555..77 PP

                     EEE CS
               B3 95 kvf 97
                     + f
  Thhalv10027563m 87 TCF 89
                     666 PP
2B368.87.6e-221332131798
                      E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                       lp+kf++  g+kk +s +++l +e  r+W++ l++r +s+++++++GW++F+ +ngLk gD+v+Fkl+g+s++++++++ +
  Thhalv10027563m 133 FLPRKFVRPDGLKK-SSNKISLINEGARTWTLILKFRESSRTFYMRSGWRSFCGENGLKPGDSVTFKLEGNSTGRPRLSFSS 213
                      79*****9999886.677******************************************************9999998765 PP
3B356.74.5e-18221319199
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..E CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelv 93 
                      f++  +++ + k++rl+lpk+f++++g++++e+ ++ l d++g +W v+l  +k+++r+ l++G keF ka ++ +  ++v++l+++ +++ ++
  Thhalv10027563m 221 FVTLSVTPASIKHRRLYLPKSFTRNNGMENAEG-KVLLLDKHGVEWPVNLVLSKRDRRMRLGSGLKEFLKAIDVTAYKSFVLELVWEdTTTPPM 313
                      677889999*****************8887776.9**************************************************99899999* PP

                      EEEE-S CS
               B3  94 vkvfrk 99 
                      +k+++k
  Thhalv10027563m 314 LKFCSK 319
                      *99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.744192IPR003340B3 DNA binding domain
SuperFamilySSF1019362.35E-17299IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.7E-202103IPR015300DNA-binding pseudobarrel domain
CDDcd100171.04E-12289No hitNo description
SMARTSM010199.0E-20392IPR003340B3 DNA binding domain
PfamPF023627.6E-11382IPR003340B3 DNA binding domain
SMARTSM010191.9E-20117215IPR003340B3 DNA binding domain
PROSITE profilePS5086314.508117215IPR003340B3 DNA binding domain
SuperFamilySSF1019364.51E-17125204IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.9E-15132204IPR015300DNA-binding pseudobarrel domain
PfamPF023625.6E-18133212IPR003340B3 DNA binding domain
CDDcd100176.99E-17134204No hitNo description
Gene3DG3DSA:2.40.330.101.6E-14213307IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-15219314IPR015300DNA-binding pseudobarrel domain
SMARTSM010199.8E-21221320IPR003340B3 DNA binding domain
PROSITE profilePS5086310.63221319IPR003340B3 DNA binding domain
PfamPF023625.7E-18221319IPR003340B3 DNA binding domain
CDDcd100171.99E-12231309No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
LFFQASTTTS YLTSLNIPLK FFSKHIQGRN ERNTAEVRSD ACKNTWKVKM EGRRLTDGWK  60
EFTIAHDLRI GDIVIFRHEG DLVFHVTCFG PSCTEIQYDV QPQDNIGNLS EKQNLKTERE  120
SFSSDQSCFV ARFLPRKFVR PDGLKKSSNK ISLINEGART WTLILKFRES SRTFYMRSGW  180
RSFCGENGLK PGDSVTFKLE GNSTGRPRLS FSSSESNESR FVTLSVTPAS IKHRRLYLPK  240
SFTRNNGMEN AEGKVLLLDK HGVEWPVNLV LSKRDRRMRL GSGLKEFLKA IDVTAYKSFV  300
LELVWEDTTT PPMLKFCSKV KT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10027563m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024004605.11e-120LOW QUALITY PROTEIN: B3 domain-containing protein REM7
SwissprotO817826e-80REM6_ARATH; B3 domain-containing protein REM6
TrEMBLV4LTV40.0V4LTV4_EUTSA; Uncharacterized protein (Fragment)
STRINGXP_006412572.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31650.11e-78B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]