PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10027524m | ||||||||
Common Name | EUTSA_v10027524mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | ERF | ||||||||
Protein Properties | Length: 273aa MW: 30187.5 Da PI: 5.5101 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.2 | 9.7e-19 | 144 | 193 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 gy+GVr+++ +g+++AeIrdp+ r +r++lg+f tae+Aa+a+++a+ ++g Thhalv10027524m 144 GYRGVRQRP-WGKFAAEIRDPK----RaTRVWLGTFETAEDAARAYDRAAIGFRG 193 8********.**********83....57*********************987776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.18E-21 | 144 | 202 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.8E-12 | 144 | 192 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.012 | 144 | 201 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.1E-37 | 144 | 207 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-11 | 145 | 156 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.68E-22 | 145 | 201 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 6.2E-32 | 145 | 201 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-11 | 167 | 183 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 273 aa Download sequence Send to blast |
MHYPNNRPEF VGAPVSERDS TRTQYPYQQE QLSPEQELSV IVSALQHVIS GEKETAPFQS 60 FSRDSTVISA GMPRSDSDTC QVCMIEGCLG CNYFFAPNQR IENKQQVEVE ERITSDSSRK 120 ESSLATTKKA EGGKIRKRKN KKNGYRGVRQ RPWGKFAAEI RDPKRATRVW LGTFETAEDA 180 ARAYDRAAIG FRGPRAKLNF PFVDYTSSSV AADDIGKSAS ASVSGTDSVE AEQWRGGGGD 240 CDMDEYLNMM MMMDFGNGNS SDSGNTIADM FQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 6e-25 | 145 | 202 | 3 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00469 | DAP | Transfer from AT4G34410 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10027524m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006412231.1 | 0.0 | ethylene-responsive transcription factor ERF109 | ||||
Swissprot | Q9SZ06 | 1e-121 | EF109_ARATH; Ethylene-responsive transcription factor ERF109 | ||||
TrEMBL | V4MBC1 | 0.0 | V4MBC1_EUTSA; Uncharacterized protein | ||||
STRING | XP_006412231.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5469 | 24 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34410.1 | 1e-100 | redox responsive transcription factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10027524m |
Entrez Gene | 18029518 |
Publications ? help Back to Top | |||
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