PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10027164m
Common NameEUTSA_v10027164mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family B3
Protein Properties Length: 437aa    MW: 49443.8 Da    PI: 8.1744
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10027164mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B365.86.6e-2120981095
                     HHHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
               B3 10 vlksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
                     +++++ l++p kf+++h +  k e+kt+tl++  s ++W+vk+  ++++    lt+GWkeFv+a++L+ gDfvvF+++g++ f  +v+
  Thhalv10027164m 20 TGSHSHLSIPVKFFSKHiE-GKYEGKTVTLRSdASEKTWKVKM--EGQR----LTEGWKEFVRAHDLRIGDFVVFRHEGDMLF--HVT 98
                     466777***********64.456789****997889*******..8887....***********************9998888..665 PP
2B368.59.3e-22152246299
                      EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
               B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                      f +++++++l+++ + +p  fa+++g++k +s++++l++e+grsW  + +      r+v+ +GW +F+ an+L++gD+++Fkl + +  ++v++
  Thhalv10027164m 152 FRQFVTASNLSRDTVGVPSAFAKRNGLNK-GSQEIILMNEEGRSWPSQQKTLVD-YRIVIVRGWTSFCTANKLEAGDSCTFKLLQ-NANTPVFR 242
                      67899**********************97.668****************54444.469999*********************998.67779*** PP

                      EE-S CS
               B3  96 vfrk 99 
                      ++++
  Thhalv10027164m 243 LCSR 246
                      9997 PP
3B340.45.2e-132493201788
                      E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
               B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrs 88 
                       lp +f++++g++k+e  +++l d++  +W+++l+++k+sg+  ++ +k Wk+F+  n++ +g++++++l++  
  Thhalv10027164m 249 HLPVSFTRANGLIKPE--KVILVDKNRAEWSMNLKVEKGSGTmyIMSGKHWKRFCAVNEVGAGESLTLELIRGG 320
                      69***********766..8****************999999954444577*******************99753 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.06E-259109IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.7E-2611112IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.28311103IPR003340B3 DNA binding domain
CDDcd100173.82E-221298No hitNo description
SMARTSM010191.5E-2814103IPR003340B3 DNA binding domain
PfamPF023629.6E-162095IPR003340B3 DNA binding domain
SuperFamilySSF1019363.14E-21145244IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.1E-21145245IPR015300DNA-binding pseudobarrel domain
SMARTSM010196.4E-24151247IPR003340B3 DNA binding domain
CDDcd100174.63E-19151245No hitNo description
PROSITE profilePS5086314.903151247IPR003340B3 DNA binding domain
PfamPF023626.8E-21152246IPR003340B3 DNA binding domain
CDDcd100172.79E-14230320No hitNo description
SMARTSM010198.4E-9248331IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.9E-13249323IPR015300DNA-binding pseudobarrel domain
PfamPF023622.0E-11249321IPR003340B3 DNA binding domain
SuperFamilySSF1019362.94E-14249333IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.237250335IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0005634Cellular Componentnucleus
GO:0009941Cellular Componentchloroplast envelope
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MENASLFSPA NPHFFQPLLT GSHSHLSIPV KFFSKHIEGK YEGKTVTLRS DASEKTWKVK  60
MEGQRLTEGW KEFVRAHDLR IGDFVVFRHE GDMLFHVTAL GPSCCEIQYA PSGSRDEDKE  120
ETSETGSETS DKEVEPNLSG TSNHSSSDLT CFRQFVTASN LSRDTVGVPS AFAKRNGLNK  180
GSQEIILMNE EGRSWPSQQK TLVDYRIVIV RGWTSFCTAN KLEAGDSCTF KLLQNANTPV  240
FRLCSRTKHL PVSFTRANGL IKPEKVILVD KNRAEWSMNL KVEKGSGTMY IMSGKHWKRF  300
CAVNEVGAGE SLTLELIRGG KLHNNYLCFQ MEQSPFDAQA RTHKRARVQR WISQETRPKH  360
EIREKAAEEG EPFRRTRASN NANQGNLENT HPCSVSDLVP KVKQSVADTL TSIRLFREEL  420
EKMEQKLEDS LQEIDNL
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10027164m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018467816.10.0PREDICTED: B3 domain-containing protein REM8-like
SwissprotO817780.0REM9_ARATH; B3 domain-containing protein REM9
TrEMBLV4MMK30.0V4MMK3_EUTSA; Uncharacterized protein (Fragment)
STRINGXP_006412570.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.10.0B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Wang S, et al.
    Chloroplast RNA-Binding Protein RBD1 Promotes Chilling Tolerance through 23S rRNA Processing in Arabidopsis.
    PLoS Genet., 2016. 12(5): p. e1006027
    [PMID:27138552]