PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10027162m | ||||||||
Common Name | EUTSA_v10027162mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 79aa MW: 9100.72 Da PI: 10.4603 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 93.5 | 1e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien + rqvtfskRrng+lKKA+ELSvLCdaeva+ii+s++ k+ye+ss Thhalv10027162m 9 KRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIILSPRSKIYEFSS 59 79***********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 6.1E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 30.74 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.62E-29 | 3 | 64 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.1E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.19E-35 | 3 | 60 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.7E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.1E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.1E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 79 aa Download sequence Send to blast |
MVRGKTEMKR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVALIILSP RSKIYEFSSS 60 RYISFFHPSP FVFLFYLC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3mu6_A | 4e-16 | 3 | 60 | 2 | 59 | Myocyte-specific enhancer factor 2A |
3mu6_B | 4e-16 | 3 | 60 | 2 | 59 | Myocyte-specific enhancer factor 2A |
3mu6_C | 4e-16 | 3 | 60 | 2 | 59 | Myocyte-specific enhancer factor 2A |
3mu6_D | 4e-16 | 3 | 60 | 2 | 59 | Myocyte-specific enhancer factor 2A |
5f28_A | 5e-16 | 1 | 68 | 1 | 75 | MEF2C |
5f28_B | 5e-16 | 1 | 68 | 1 | 75 | MEF2C |
5f28_C | 5e-16 | 1 | 68 | 1 | 75 | MEF2C |
5f28_D | 5e-16 | 1 | 68 | 1 | 75 | MEF2C |
6byy_A | 6e-16 | 1 | 60 | 1 | 60 | MEF2 CHIMERA |
6byy_B | 6e-16 | 1 | 60 | 1 | 60 | MEF2 CHIMERA |
6byy_C | 6e-16 | 1 | 60 | 1 | 60 | MEF2 CHIMERA |
6byy_D | 6e-16 | 1 | 60 | 1 | 60 | MEF2 CHIMERA |
6bz1_A | 6e-16 | 1 | 60 | 1 | 60 | MEF2 CHIMERA |
6bz1_B | 6e-16 | 1 | 60 | 1 | 60 | MEF2 CHIMERA |
6bz1_C | 6e-16 | 1 | 60 | 1 | 60 | MEF2 CHIMERA |
6bz1_D | 6e-16 | 1 | 60 | 1 | 60 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that promotes flowering, especially in response to vernalization by short periods of cold, in an FLC-inpedendent manner. {ECO:0000269|PubMed:16778081}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10027162m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Maintained at very low levels by the polycomb-group (PcG) proteins MSI1, CLF, and EMF2 via histone methylation (H3K27me3). Derepressed upon cold treatment (vernalization). {ECO:0000269|PubMed:16778081}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL031018 | 5e-63 | AL031018.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F7H19 (ESSA project). | |||
GenBank | AL161558 | 5e-63 | AL161558.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 58. | |||
GenBank | CP002687 | 5e-63 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006413597.2 | 1e-34 | agamous-like MADS-box protein AGL19 | ||||
Refseq | XP_007134936.1 | 8e-35 | hypothetical protein PHAVU_010G088100g | ||||
Refseq | XP_007134937.1 | 8e-35 | hypothetical protein PHAVU_010G088100g | ||||
Swissprot | O82743 | 5e-34 | AGL19_ARATH; Agamous-like MADS-box protein AGL19 | ||||
TrEMBL | V4MF18 | 2e-49 | V4MF18_EUTSA; Uncharacterized protein | ||||
STRING | XP_006413596.1 | 3e-50 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM78 | 28 | 413 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G22950.1 | 2e-36 | AGAMOUS-like 19 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10027162m |
Entrez Gene | 18028589 |
Publications ? help Back to Top | |||
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