PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10027114m | ||||||||
Common Name | EUTSA_v10027114mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | LBD | ||||||||
Protein Properties | Length: 175aa MW: 19439.8 Da PI: 4.8443 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 108.9 | 3.9e-34 | 5 | 107 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal..peeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +C+aCkvl+ C+ +C++apyfp+++p+kf vh++FGa+nv k+l++ ++ +re+a+++l yeAear++dPv G++g++l++++ l++lk+ Thhalv10027114m 5 PCSACKVLKSVCTGECIFAPYFPSTEPEKFDRVHRIFGAENVYKILNNEtfSPLQREHAVKALNYEAEARIHDPVTGCYGMYLAYEKILNNLKE 98 7*********************************************986568999*************************************** PP DUF260 93 elallkeel 101 +++++k+e+ Thhalv10027114m 99 QIVSAKNEI 107 ***999875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.311 | 4 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.2E-32 | 5 | 104 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
MASNPCSACK VLKSVCTGEC IFAPYFPSTE PEKFDRVHRI FGAENVYKIL NNETFSPLQR 60 EHAVKALNYE AEARIHDPVT GCYGMYLAYE KILNNLKEQI VSAKNEIVVT KRSDKVPQYS 120 DTPMPEDFLM TQNHEDFLMT QNQQMGDNHG ADEVSTSATP PASLGGTNDT QQTP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-30 | 2 | 108 | 8 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-30 | 2 | 108 | 8 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10027114m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006413629.1 | 1e-130 | LOB domain-containing protein 35 | ||||
Swissprot | Q9FFL3 | 6e-44 | LBD35_ARATH; LOB domain-containing protein 35 | ||||
TrEMBL | V4MIB8 | 1e-129 | V4MIB8_EUTSA; Uncharacterized protein | ||||
STRING | XP_006413629.1 | 1e-130 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4525 | 14 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G35900.1 | 2e-46 | LOB domain-containing protein 35 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10027114m |
Entrez Gene | 18028318 |