PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT5G35900.1 | ||||||||
Common Name | ASL27, LBD35, MIK22.21 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | LBD | ||||||||
Protein Properties | Length: 206aa MW: 22816.2 Da PI: 6.2258 | ||||||||
Description | LOB domain-containing protein 35 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 110.6 | 1.1e-34 | 6 | 104 | 2 | 100 |
DUF260 2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 C+aCkv++ +Ca++C++ap+fp ++ ++f+ +h++FGa nv k+l++l++ +re+a+++l+yeAea rdP+ G+vg+++++++ql++l+++++++k+ AT5G35900.1 6 CSACKVMKCDCAPNCIFAPHFPLTNLETFERLHRIFGAGNVFKILANLDPIQRETAVNALCYEAEALERDPIFGCVGIFNHYKNQLQNLDEQINSAKN 103 **********************************************************************************************9998 PP DUF260 100 e 100 e AT5G35900.1 104 E 104 7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.989 | 4 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.7E-31 | 6 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008150 | Biological Process | biological_process |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MNSTCCSACK VMKCDCAPNC IFAPHFPLTN LETFERLHRI FGAGNVFKIL ANLDPIQRET 60 AVNALCYEAE ALERDPIFGC VGIFNHYKNQ LQNLDEQINS AKNELAAIIG LDNVPQYSSI 120 PMPADFLTNK FSLHPYIEKM EGLDEVQKKE LMQLPPVDAQ VIVNEMFRKR GNIKICGGHG 180 DACASTSGGT SATQKTLPFP QNHNQP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 5e-28 | 6 | 105 | 12 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 5e-28 | 6 | 105 | 12 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 240256368 | 0.0 | ||||
Genevisible | 249671_at | 0.0 | ||||
Expression Atlas | AT5G35900 | - | ||||
AtGenExpress | AT5G35900 | - | ||||
ATTED-II | AT5G35900 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT5G35900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT5G35900 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB005236 | 0.0 | AB005236.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MIK22. | |||
GenBank | AB473860 | 0.0 | AB473860.1 Arabidopsis thaliana ASL27 mRNA for ASYMMETRIC LEAVES2-like 27 protein, complete cds. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. | |||
GenBank | DQ056696 | 0.0 | DQ056696.1 Arabidopsis thaliana LOB domain family protein (At5g35900) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_198439.1 | 1e-154 | LOB domain-containing protein 35 | ||||
Swissprot | Q9FFL3 | 1e-155 | LBD35_ARATH; LOB domain-containing protein 35 | ||||
TrEMBL | A0A178UHA2 | 1e-152 | A0A178UHA2_ARATH; LBD35 | ||||
STRING | AT5G35900.1 | 1e-153 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4525 | 14 | 55 |
Link Out ? help Back to Top | |
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Phytozome | AT5G35900.1 |
Entrez Gene | 833576 |
iHOP | AT5G35900 |
wikigenes | AT5G35900 |