PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10027038m | ||||||||
Common Name | EUTSA_v10027038mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 237aa MW: 27245.7 Da PI: 7.2522 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 35.3 | 1.5e-11 | 1 | 28 | 15 | 42 |
HHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 15 kRrngilKKAeELSvLCdaevaviifss 42 kR++g++KK +EL +LC+++++ ii+s+ Thhalv10027038m 1 KRKKGLMKKVNELATLCGINACAIIYSP 28 9**************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00266 | 1.79E-18 | 1 | 49 | No hit | No description |
Pfam | PF00319 | 6.4E-11 | 1 | 29 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 9.6E-4 | 1 | 38 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 10.148 | 1 | 27 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.88E-12 | 1 | 56 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
KRKKGLMKKV NELATLCGIN ACAIIYSPYD SNPEVWLSDS GVQRIVSDFW IHFSDKGSPK 60 ASEHLKKQKK DNKELEMTQV MFQCLIGNTR MFHLNVIDLN NLSYLIEKYL KDINRRIKIL 120 ENAGMEMSDV GASTTTAPDA TIHELGSSSS PATAAAFFNP TQHHHQQQCR HPAFPNIGFY 180 EQNLNLNLNQ NHNQNQQWFI EMMNHSDQTS FAVEHISFPF MDDNHRNHHH QWTFTF* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10027038m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006392079.1 | 1e-81 | agamous-like MADS-box protein AGL80 | ||||
Swissprot | Q9FJK3 | 2e-72 | AGL80_ARATH; Agamous-like MADS-box protein AGL80 | ||||
TrEMBL | V4LZS1 | 1e-179 | V4LZS1_EUTSA; Uncharacterized protein (Fragment) | ||||
STRING | XP_006414727.1 | 1e-179 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM70 | 28 | 415 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 4e-69 | AGAMOUS-like 80 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10027038m |
Entrez Gene | 18029362 |
Publications ? help Back to Top | |||
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