PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10026864m | ||||||||
Common Name | EUTSA_v10026864mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | WRKY | ||||||||
Protein Properties | Length: 539aa MW: 58323.8 Da PI: 5.9352 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.5 | 8.9e-31 | 297 | 355 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+ Thhalv10026864m 297 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAgGCPVRKQVQRCAEDRSILITTYEGNHNHP 355 7****************************9****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.2E-33 | 281 | 357 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.45E-28 | 289 | 357 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.597 | 291 | 357 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.8E-36 | 296 | 356 | IPR003657 | WRKY domain |
Pfam | PF03106 | 9.5E-27 | 298 | 355 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 539 aa Download sequence Send to blast |
MFRFPVSLGG SRDEARHDQI TPLDERRVVV GEVDFFSEKR DRVSRENIND DDEEPNKVHV 60 KMENSRAEDN DRSRDVNIGL NLLTANTGSD ESTVDDGLSM DMEDKRAKIE NAQLQEELKK 120 MKIENQRLRE MLSQATNNFN SLQMQLVAVM RQQEQRISSQ DHLLATEGNA VGRKLPEVQA 180 MIPRQFMDLG PSSGAAEHDA EVSSEERTMV LSGSPPSLLE SSNPRESGKR LLGREESPES 240 ESNAWGNPNK VPKHNPPSGN NNNSNGNGNV IDQSAAEATM RKARVSVRAR SEATMITDGC 300 QWRKYGQKMA KGNPCPRAYY RCTMAGGCPV RKQVQRCAED RSILITTYEG NHNHPLPPAA 360 MAMASTTTAA ASMLLSGSMS SQDGLMNPTN LLARAILPCS SSMATISASA PFPTITLDLT 420 NSSNGNTSNI GTNNPLMQFA QRPGFNPAVL PQVVGQALYY NQQQSKFSGL QLPAQPLQIA 480 TTSSMAESVS AASAAIASDP NFAAALAAAI TSIINGSSHQ NNSNNNTNVA TSNGDNRQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 2e-23 | 283 | 359 | 1 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00447 | DAP | Transfer from AT4G22070 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10026864m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC246577 | 0.0 | KC246577.1 Brassica napus WRKY transcription factor 31.1 (WRKY31.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006413694.1 | 0.0 | probable WRKY transcription factor 31 | ||||
Refseq | XP_024005433.1 | 0.0 | probable WRKY transcription factor 31 | ||||
Swissprot | Q93WT0 | 0.0 | WRK31_ARATH; Probable WRKY transcription factor 31 | ||||
TrEMBL | V4MIH5 | 0.0 | V4MIH5_EUTSA; Uncharacterized protein | ||||
STRING | XP_006413694.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1057 | 28 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G22070.1 | 0.0 | WRKY DNA-binding protein 31 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10026864m |
Entrez Gene | 18028621 |