PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10026328m
Common NameEUTSA_v10026328mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family ERF
Protein Properties Length: 188aa    MW: 20888.6 Da    PI: 5.743
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10026328mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.5e-182676256
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
                     +y+GVr +  +g+Wv+eIr+p+    + +r++lg+++ +e+Aa+a++aa  +++ge
  Thhalv10026328m 26 CYRGVRKRA-WGKWVSEIRVPR----TgRRIWLGSYDAPEKAARAYDAALFCIRGE 76
                     8*****887.**********95....25*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.48E-202684IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.6E-282684IPR001471AP2/ERF domain
PROSITE profilePS5103222.0622683IPR001471AP2/ERF domain
PfamPF008471.0E-112676IPR001471AP2/ERF domain
SMARTSM003801.0E-332689IPR001471AP2/ERF domain
PRINTSPR003672.9E-92738IPR001471AP2/ERF domain
CDDcd000181.66E-312783No hitNo description
PRINTSPR003672.9E-94965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MPPSTPKSPF LSSSLEEAHE DRRFKCYRGV RKRAWGKWVS EIRVPRTGRR IWLGSYDAPE  60
KAARAYDAAL FCIRGERGVF NFPSDKKPQL PEGSVRPLSK HDIQTIATNY ASSVVSVPSS  120
TTTIPVTAQV TSQDPASPDA SVTTEIIEMA NEHYLPVNAT AESIFSVEDL ELDNFLMMDI  180
DWINNLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1627851574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00463DAPTransfer from AT4G31060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10026328m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006412635.21e-138ethylene-responsive transcription factor ERF015
SwissprotQ6NLD51e-115ERF15_ARATH; Ethylene-responsive transcription factor ERF015
TrEMBLV4MMQ21e-136V4MMQ2_EUTSA; Uncharacterized protein
STRINGXP_006412635.11e-137(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM148991620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31060.11e-108ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]