PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10026288m | ||||||||
Common Name | EUTSA_v10026288mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | ERF | ||||||||
Protein Properties | Length: 199aa MW: 21719.8 Da PI: 6.9179 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.8 | 1.3e-18 | 31 | 80 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ykG+r +k +g+WvAeIr+p +kr r++lg++ t+e Aa+a++ a +l+g Thhalv10026288m 31 PYKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPEAAARAYDTAVFYLRG 80 69*****99.**********9...336*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 9.1E-39 | 31 | 94 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.813 | 31 | 88 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.5E-9 | 32 | 43 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.58E-26 | 32 | 90 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.5E-30 | 32 | 89 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.31E-21 | 32 | 89 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 4.2E-12 | 32 | 80 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.5E-9 | 54 | 70 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
METATDVAAV APTPTVTVAA AAATTRKREK PYKGIRMRKW GKWVAEIREP NKRSRIWLGS 60 YSTPEAAARA YDTAVFYLRG PSARLNFPEL LAGVTVAGGG GGNGGGDMSA AYIRRRAAEV 120 GAQVDALEAA GGNRRHHHHH HHQQRGNHDH VDDDHSDYRL NDDHVECSSN EEGFKRCNGS 180 WEPVDLNKLP DPETSEDD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-15 | 30 | 88 | 4 | 63 | ATERF1 |
3gcc_A | 2e-15 | 30 | 88 | 4 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00020 | PBM | Transfer from AT4G36900 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10026288m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF003103 | 1e-154 | AF003103.1 Arabidopsis thaliana AP2 domain containing protein RAP2.10 mRNA, partial cds. | |||
GenBank | AJ002598 | 1e-154 | AJ002598.1 Arabidopsis thaliana mRNA for TINY-like protein. | |||
GenBank | AL161590 | 1e-154 | AL161590.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 86. | |||
GenBank | BT020317 | 1e-154 | BT020317.1 Arabidopsis thaliana At4g36900 gene, complete cds. | |||
GenBank | BT025757 | 1e-154 | BT025757.1 Arabidopsis thaliana At4g36900 mRNA, complete cds. | |||
GenBank | CP002687 | 1e-154 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. | |||
GenBank | Z99707 | 1e-154 | Z99707.1 Arabidopsis thaliana DNA chromosome 4, ESSA I AP2 contig fragment No. 1. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006411914.1 | 1e-146 | ethylene-responsive transcription factor RAP2-10 | ||||
Swissprot | Q9SW63 | 1e-94 | RA210_ARATH; Ethylene-responsive transcription factor RAP2-10 | ||||
TrEMBL | V4MDR5 | 1e-144 | V4MDR5_EUTSA; Uncharacterized protein | ||||
STRING | XP_006411914.1 | 1e-145 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36900.1 | 2e-83 | related to AP2 10 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10026288m |
Entrez Gene | 18030616 |
Publications ? help Back to Top | |||
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