PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10026242m | ||||||||
Common Name | EUTSA_v10026242mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | ERF | ||||||||
Protein Properties | Length: 211aa MW: 24502 Da PI: 9.4956 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 37.7 | 5.1e-12 | 121 | 162 | 3 | 51 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 +GV++ k + +W A I++ +++++lg+f + eeAa+++++a+ Thhalv10026242m 121 MRGVYY-K-NMKWQAAIKVE-----KRQIHLGTFSSQEEAARLYDRAAF 162 79**96.5.7*********6.....6********************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 9.361 | 103 | 175 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.6E-7 | 120 | 177 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.6E-6 | 120 | 163 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.18E-9 | 121 | 165 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 9.1E-9 | 122 | 167 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.04E-12 | 122 | 173 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MVSLRRRRLL GLCCGPNGYV TPLPFLTAEE MITGIPKPNP ELSEMVKHEE KTLIEEGSGS 60 LSERTRSKSM HFKSDFSDIS PDDSGSISPK WEQNTCSADQ PLKRRKRHRR KEVQNQEPCL 120 MRGVYYKNMK WQAAIKVEKR QIHLGTFSSQ EEAARLYDRA AFMCGREPNF ELSEEDKHEL 180 KRQSWEEFLA CTRRTITNKK PKRRIDELLN * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 103 | 111 | RRKRHRRKE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10026242m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY133690 | 1e-96 | AY133690.1 Arabidopsis thaliana clone C103146 unknown protein (At4g13040) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006414971.2 | 1e-156 | ethylene-responsive transcription factor-like protein At4g13040 isoform X1 | ||||
Refseq | XP_024005895.1 | 1e-156 | ethylene-responsive transcription factor-like protein At4g13040 isoform X1 | ||||
Refseq | XP_024005896.1 | 1e-156 | ethylene-responsive transcription factor-like protein At4g13040 isoform X1 | ||||
Refseq | XP_024005899.1 | 1e-157 | ethylene-responsive transcription factor-like protein At4g13040 isoform X4 | ||||
Refseq | XP_024005900.1 | 1e-157 | ethylene-responsive transcription factor-like protein At4g13040 isoform X4 | ||||
Swissprot | Q56XP9 | 1e-88 | ERFL1_ARATH; Ethylene-responsive transcription factor-like protein At4g13040 | ||||
TrEMBL | V4MIH2 | 1e-155 | V4MIH2_EUTSA; Uncharacterized protein | ||||
STRING | XP_006414971.1 | 1e-156 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6189 | 26 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13040.1 | 5e-77 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10026242m |
Entrez Gene | 18029978 |