PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10026204m
Common NameEUTSA_v10026204mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family ERF
Protein Properties Length: 218aa    MW: 24254.8 Da    PI: 4.3595
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10026204mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2569.6e-181868155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     + y+GVr ++ +g+Wv+eIr+p++   + r++lg+f tae+A +a++ a+++++g
  Thhalv10026204m 18 PVYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTFPTAEMAMRAHDVAALSIKG 68
                     68*****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.9E-121868IPR001471AP2/ERF domain
PROSITE profilePS5103222.81976IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.9E-311977IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-211976IPR016177DNA-binding domain
SMARTSM003807.0E-351982IPR001471AP2/ERF domain
CDDcd000182.30E-312078No hitNo description
PRINTSPR003675.3E-102031IPR001471AP2/ERF domain
PRINTSPR003675.3E-104258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MVESSLGSDK EKKGSKQPVY RGVRMRSWGK WVSEIREPRK KSRIWLGTFP TAEMAMRAHD  60
VAALSIKGTS AILNFPELSE FLPRPASLSP RDVRAAATKA AFMEFDTAPF GLESENSETA  120
ASNNRSESET ASFSSSSASS IYEESSVSDH LDEIVELPSL DTCLDESNEL RSEFVVFDSL  180
EFVPSWLRGG TEQDFTFDND SPFDSVFEEC FSWKQFP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-191477973Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00467DAPTransfer from AT4G32800Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10026204m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006412430.11e-156ethylene-responsive transcription factor ERF043
SwissprotQ9M0804e-87ERF43_ARATH; Ethylene-responsive transcription factor ERF043
TrEMBLV4MM461e-155V4MM46_EUTSA; Uncharacterized protein
STRINGXP_006412430.11e-156(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32800.13e-82ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]