PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10025995m

Common Name

EUTSA_v10025811mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

bHLH

Protein Properties

Length: 266aa MW: 29957.4 Da PI: 4.5744

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10025995m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.5	6.4e-05	198	236	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L++l+ + +K + a++L A+ YIk Lq Thhalv10025995m 198 RKEKLGDRITALQQLVSPF-----GKTDTASVLHDAIGYIKFLQ 236 677888999*****998.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.452	186	235	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.7E-10	196	242	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.18E-5	196	240	No hit	No description
Gene3D	G3DSA:4.10.280.10	5.2E-8	200	239	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MTEEFETAGV CTETSWNSAN SMFLAGFSLP RSTEIAIDTG SFEWQNIDTI DVKTYNESYH 60 NTSTFLSDTN FDSNSRIYVS SQFNLHEEEK FNPVNSCLKG LFDYSEQLLV PNCAKPDLFE 120 SFHLFDDVFL NESRTVSVFD HEIREKAEEE IQAWQSLITC KGASEKTEEL KDTELSPAPP 180 LKRQRLETPS QFPSFKVRKE KLGDRITALQ QLVSPFGKTD TASVLHDAIG YIKFLQEQIS 240 VSISNPHLNS KGSGEQKQVL KLVTG*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10025995m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006413790.1	0.0	transcription factor bHLH103
Swissprot	Q8VZ22	1e-126	BH103_ARATH; Transcription factor bHLH103
TrEMBL	V4MIQ3	0.0	V4MIQ3_EUTSA; Uncharacterized protein
STRING	XP_006413790.1	0.0	(Eutrema salsugineum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21340.1	1e-128	bHLH family protein

Link Out ? help Back to Top
Phytozome	Thhalv10025995m
Entrez Gene	18029589

Publications ? help Back to Top
Kawabe A,Hansson B,Forrest A,Hagenblad J,Charlesworth D Comparative gene mapping in Arabidopsis lyrata chromosomes 6 and 7 and A. thaliana chromosome IV: evolutionary history, rearrangements and local recombination rates. Genet. Res., 2006. 88(1): p. 45-56 [PMID:17014743]