PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10025812m
Common NameEUTSA_v10025812mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family B3
Protein Properties Length: 307aa    MW: 35145 Da    PI: 4.5557
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10025812mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.76.3e-112425395
                     EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
               B3 53 rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
                     ++k++++++++GW +Fvk+n L +gDf++F ++g++ f   v+
  Thhalv10025812m  2 KRKQDEVYFEQGWVKFVKDNSLSDGDFLTFVYNGDRIF--EVS 42
                     577888**************************998877..444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.069147IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-11249IPR015300DNA-binding pseudobarrel domain
PfamPF023625.7E-8240IPR003340B3 DNA binding domain
CDDcd100175.97E-8444No hitNo description
SuperFamilySSF1019361.71E-11449IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-5205303IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.0E-5207302IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MKRKQDEVYF EQGWVKFVKD NSLSDGDFLT FVYNGDRIFE VSIYGPDGCK EVRAVTEADD  60
DEEDSSNDTD AISESEVANT IPRTKNKGKS KVEVVEEESD DDEEDSIYAD TETETGSKFK  120
MAKTIPRSIN KGKMKEEVVE GADEDSDSDY NEAFGGLDFE ENFNSDSSYA PDSEDTATYV  180
EPKVKNLKKK VKPKIKNPEA YLDNPRNVYF ETGVKKRRFE LLVHAQLVKD YSLKFEKNIY  240
FIDNHNAGKL LAETAVWNDE RVCIKGWQHI CERNQVKKED GILCELFRKR ELVYAIKVHI  300
IKAKDL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10025812m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024005760.10.0B3 domain-containing protein At4g34400
SwissprotQ9SZ053e-92Y3440_ARATH; B3 domain-containing protein At4g34400
TrEMBLV4LSW10.0V4LSW1_EUTSA; Uncharacterized protein
STRINGXP_006412232.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65551641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34400.11e-75B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Richter R, et al.
    Floral regulators FLC and SOC1 directly regulate expression of the B3-type transcription factor TARGET OF FLC AND SVP 1 at the Arabidopsis shoot apex via antagonistic chromatin modifications.
    PLoS Genet., 2019. 15(4): p. e1008065
    [PMID:30946745]