PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10025443m
Common NameEUTSA_v10025443mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family TALE
Protein Properties Length: 386aa    MW: 43424.6 Da    PI: 6.4587
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10025443mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.78.4e-083303632154
                      HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      k +yp++e++++L +++gL+ +q+ +WF N+R +
  Thhalv10025443m 330 KWPYPTEEDKAKLVQETGLQLKQINNWFINQRKR 363
                      569*****************************87 PP
2ELK25.14e-09284305122
              ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                      ELKh+L++++++++ ++++E++
  Thhalv10025443m 284 ELKHELKQGFKEKIEDIREEIM 305
                      9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012553.1E-19119163IPR005540KNOX1
PfamPF037903.8E-17121162IPR005540KNOX1
SMARTSM012561.9E-26169225IPR005541KNOX2
PfamPF037912.5E-19174224IPR005541KNOX2
PROSITE profilePS512139.516284304IPR005539ELK domain
SMARTSM011880.0018284305IPR005539ELK domain
PROSITE profilePS5007111.969304367IPR001356Homeobox domain
SuperFamilySSF466891.24E-15306371IPR009057Homeodomain-like
SMARTSM003895.0E-10306371IPR001356Homeobox domain
CDDcd000861.42E-10307363No hitNo description
Gene3DG3DSA:1.10.10.608.9E-25311369IPR009057Homeodomain-like
PfamPF059201.7E-17324363IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009727Biological Processdetection of ethylene stimulus
GO:0071369Biological Processcellular response to ethylene stimulus
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MSFNSSHLLP PQEDLPLRHF SDQSQHPPQR HFSETPSLLT ASFLNLPSTA ATTAESNFAP  60
PLRNGDSSAA DTTRRWLYFQ TEIQNTGEGR PEVTDGVNAD GETIHGVVGG DGGEDWRSAS  120
YKAAILRHPM YEQLLAAHVA CLRVATPVDQ IPRIDAQLSQ LHTVAAKYST LGVVEDNKEL  180
DHFMSHYVVL LCSFKEQLQH HVCVHAMEAI TACWEIEQSL QSITGVSPSE NNGKTMSDDE  240
DGNQVESEVN MFDGSLDGSD CLMGFGPLVP TERERSLMER VKKELKHELK QGFKEKIEDI  300
REEIMRKRRA GKLPGDTTSV LKEWWRTHSK WPYPTEEDKA KLVQETGLQL KQINNWFINQ  360
RKRNWNNNSS TSSTLSKSKR KRTGK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1360381RKRNWNNNSSTSSTLSKSKRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10025443m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3525800.0AK352580.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-04-I15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006412522.10.0homeobox protein knotted-1-like 5
SwissprotP480020.0KNAT5_ARATH; Homeobox protein knotted-1-like 5
TrEMBLE4MVN30.0E4MVN3_EUTHA; mRNA, clone: RTFL01-04-I15
TrEMBLV4LTQ00.0V4LTQ0_EUTSA; Uncharacterized protein
STRINGXP_006412522.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44428158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32040.10.0KNOTTED1-like homeobox gene 5