PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10025245m

Common Name

EUTSA_v10025245mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

HRT-like

Protein Properties

Length: 435aa MW: 48049 Da PI: 9.1043

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10025245m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	52.7	7.2e-17	230	260	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv+ledG++C+++P++gRKRC H G+Ri Thhalv10025245m 230 ICGVLLEDGTTCTTSPMQGRKRCTVHRGQRI 260 8*****************************7 PP
2	HRT-like	48.6	1.3e-15	285	315	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGvil d C++qPv RKRCe HKGmR+ Thhalv10025245m 285 ICGVILPDMVRCRNQPVARRKRCEDHKGMRV 315 8*****************************7 PP
3	HRT-like	62.1	8.1e-20	402	432	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv+l +G vC+++PvkgRKRCeeHKGmR+ Thhalv10025245m 402 ICGVKLYNGLVCEKSPVKGRKRCEEHKGMRV 432 8*****************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 435 aa Download sequence Send to blast
MSAVAASDEF KFEKENKKKK LIFCKFSITF RSVNGKTIES DQKGGTITVE LNPTPSSPSG 60 RVLPDPCFCI LIGANDKEEF RKGKDLLGRY RVQGSFPGLG VAVTNHDQSL KVDVDDVFVA 120 SLGQNESIRS RLRSYGIARH DLLQKLGNNE IVNQRKPGLP QTILPVTQKI IGNRTKDKKD 180 DLAEERAISS DAAGEKSDFL APIVRLSRSR PQPVSDRHDD IVDDSDSASI CGVLLEDGTT 240 CTTSPMQGRK RCTVHRGQRI SCVLPGKKIP CEVSPERECE ETENICGVIL PDMVRCRNQP 300 VARRKRCEDH KGMRVNAFFF LLNPTERDIA LKEEKSKPET CTGMNKKDSG GPSLICEATT 360 KSGLPCIRSA PMGSRRCWQH KDKTLDRRSS ETVQSATVSQ VICGVKLYNG LVCEKSPVKG 420 RKRCEEHKGM RVAS*

Sequence ? help Back to Top

Protein Sequence Length: 435 aa Download sequence Send to blast

MSAVAASDEF KFEKENKKKK LIFCKFSITF RSVNGKTIES DQKGGTITVE LNPTPSSPSG  60
RVLPDPCFCI LIGANDKEEF RKGKDLLGRY RVQGSFPGLG VAVTNHDQSL KVDVDDVFVA  120
SLGQNESIRS RLRSYGIARH DLLQKLGNNE IVNQRKPGLP QTILPVTQKI IGNRTKDKKD  180
DLAEERAISS DAAGEKSDFL APIVRLSRSR PQPVSDRHDD IVDDSDSASI CGVLLEDGTT  240
CTTSPMQGRK RCTVHRGQRI SCVLPGKKIP CEVSPERECE ETENICGVIL PDMVRCRNQP  300
VARRKRCEDH KGMRVNAFFF LLNPTERDIA LKEEKSKPET CTGMNKKDSG GPSLICEATT  360
KSGLPCIRSA PMGSRRCWQH KDKTLDRRSS ETVQSATVSQ VICGVKLYNG LVCEKSPVKG  420
RKRCEEHKGM RVAS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in the regulation of cell differentiation in meristems (By similarity). Binds DNA without sequence preference (PubMed:22226340). {ECO:0000250\|UniProtKB:F4K933, ECO:0000269\|PubMed:22226340}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10025245m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024005800.1	0.0	protein EFFECTOR OF TRANSCRIPTION 1
Swissprot	F4JU69	1e-164	ET1_ARATH; Protein EFFECTOR OF TRANSCRIPTION 1
TrEMBL	V4MHA4	0.0	V4MHA4_EUTSA; Uncharacterized protein
STRING	XP_006413219.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2954	27	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G26170.1	1e-155

Link Out ? help Back to Top
Phytozome	Thhalv10025245m
Entrez Gene	18029306