PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT4G26170.1 | ||||||||
Common Name | ET1, F20B18.280 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | HRT-like | ||||||||
Protein Properties | Length: 506aa MW: 57002.7 Da PI: 9.3423 | ||||||||
Description | |||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HRT-like | 58.3 | 1.3e-18 | 306 | 334 | 2 | 30 |
HRT-like 2 CGviledGsvCkrqPvkgRKRCeeHKGmR 30 CGv+ledG++C+++PvkgRKRC eHKG+R AT4G26170.1 306 CGVLLEDGTTCTTTPVKGRKRCTEHKGKR 334 ****************************9 PP | |||||||
2 | HRT-like | 46.2 | 7.6e-15 | 360 | 390 | 1 | 31 |
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGvil d + C+ +Pv RKRCe HKGmR+ AT4G26170.1 360 ICGVILPDMIRCRSKPVSRRKRCEDHKGMRV 390 8*****************************7 PP | |||||||
3 | HRT-like | 31.1 | 3.9e-10 | 428 | 455 | 2 | 29 |
HRT-like 2 CGviledGsvCkrqPvkgRKRCeeHKGm 29 C +++++G +C+r++ +g KRC++HK++ AT4G26170.1 428 CEATTKNGLPCTRSAPEGSKRCWQHKDK 455 9*************************86 PP | |||||||
4 | HRT-like | 63.7 | 2.6e-20 | 474 | 504 | 1 | 31 |
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCG++l +GsvC+++PvkgRKRCeeHKGmRi AT4G26170.1 474 ICGFKLYNGSVCEKSPVKGRKRCEEHKGMRI 504 8*****************************7 PP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 506 aa Download sequence Send to blast |
MLVVLQIHSS INVKVFASRL RKHFFFTRRK ITRIATCLSS SRCPLYPSHW NLCRWNNKQG 60 GTEIGLLIGG LIVFRQTLKS DQETKREQKK RDWILVTAFP SPSCSPCSRE TTTFELIMTP 120 FFQSGRVSPD LCFCVNPFQK LQNSQDFCGL LLNFSRFRSK AKGANEKENF REGKDLVGRN 180 RVQGAFQGLY ELSHDHGRKD DVLVANLGQP ESIRSRLRSY SRSFAHHDLL KQGLSQTILP 240 TTQNKSDNQT EEKKSDSEEE REVSSDAAEK ESNSLPSILR LSRSRPQPVS EKHDDIVDES 300 DSASACGVLL EDGTTCTTTP VKGRKRCTEH KGKRLSRVSP GIHIPCEVPT VRECEETENI 360 CGVILPDMIR CRSKPVSRRK RCEDHKGMRV NAFFFLLNPT ERDKAVNEDK SKPETSTGMN 420 QEGSGLLCEA TTKNGLPCTR SAPEGSKRCW QHKDKTLNHG SSENVQSATA SQVICGFKLY 480 NGSVCEKSPV KGRKRCEEHK GMRITS |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 240256069 | 0.0 | ||||
Genevisible | 254017_at | 1e-172 | ||||
Expression Atlas | AT4G26170 | - | ||||
AtGenExpress | AT4G26170 | - | ||||
ATTED-II | AT4G26170 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in rosette leaves, stipules, stems, flowers, siliques and mature seeds. Expressed in the vascular bundles of xylem in shoot parenchyma cells. Expressed in the remnant cytoplasm of differentiated fiber cells and in protoxylem element of parenchymal cells. {ECO:0000269|PubMed:17991462}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator involved in the regulation of cell differentiation in meristems (By similarity). Binds DNA without sequence preference (PubMed:22226340). {ECO:0000250|UniProtKB:F4K933, ECO:0000269|PubMed:22226340}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT4G26170.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT4G26170 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL049171 | 0.0 | AL049171.1 Arabidopsis thaliana DNA chromosome 4, BAC clone (ESSA project). | |||
GenBank | AL049483 | 0.0 | AL049483.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F20B18 (ESSA project). | |||
GenBank | AL161564 | 0.0 | AL161564.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 64. | |||
GenBank | CP002687 | 0.0 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_194347.4 | 0.0 | transcription factor | ||||
Swissprot | F4JU69 | 0.0 | ET1_ARATH; Protein EFFECTOR OF TRANSCRIPTION 1 | ||||
TrEMBL | A0A178V080 | 0.0 | A0A178V080_ARATH; Uncharacterized protein | ||||
STRING | AT4G26170.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2954 | 27 | 63 | Representative plant | OGRP5248 | 14 | 20 |
Link Out ? help Back to Top | |
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Phytozome | AT4G26170.1 |
Entrez Gene | 828723 |
iHOP | AT4G26170 |
wikigenes | AT4G26170 |
Publications ? help Back to Top | |||
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