PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10025226m
Common NameEUTSA_v10025226mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C3H
Protein Properties Length: 440aa    MW: 49515.6 Da    PI: 7.2285
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10025226mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.62.2e-08198218526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                       C++f++ G Ck Gd+C FaHg
  Thhalv10025226m 198 ACPDFRK-GSCKKGDTCEFAHG 218
                      7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.6E-5193219IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.497194220IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.1E-6197220IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-6198218IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.728228252IPR000571Zinc finger, CCCH-type
SMARTSM003560.5228251IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005886Cellular Componentplasma membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MNLITQKQPY AHTSVTLTSS KSIDKRPHHE NIQAILSRGE VSSRSTKKEL FCLRENQKNK  60
TEKDECDLSP EIKKMMIGEA RRTHPTVEIP PWPVSEDFSA ADMFSPAMNS PDCSMLEALA  120
ALQRYLPSNE PDPDSDSDLL GPDSPIDAYS CDHFRMYDFK VRRCARGRSH DWTECPYAHP  180
GEKARRRDPR KYHYSGTACP DFRKGSCKKG DTCEFAHGVF ECWLHPLRYR TQPCKDGGNC  240
RRKVCFFAHS PDQLRYLPNR SPDRVDSFDV SSPIRHSCAR AFQLSISPVS GSPPMSPRAD  300
SESSPMTQSL SRSLGSCSIN DTVTSFRNLQ FEKVKSFPPT YNNPLRCYQS GFGSPRGSIL  360
GPGFQSLPST PTRPGNLDIW ENGLEEEPAM ERVVESGREL RAKMFEKLSK ENCMDRVEPD  420
PDQNSGEAPD VGWVSELVM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10025226m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3528160.0AK352816.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-02-K04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024004490.10.0zinc finger CCCH domain-containing protein 49
SwissprotQ9M0G20.0C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLV4P4C30.0V4P4C3_EUTSA; Uncharacterized protein
STRINGXP_006412868.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12492788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.10.0C3H family protein
Publications ? help Back to Top
  1. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]