PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10025116m
Common NameEUTSA_v10025116mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family HSF
Protein Properties Length: 468aa    MW: 51472.4 Da    PI: 4.798
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10025116mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.62.6e-35371282102
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+y+++ed++++ ++sw   +nsfvv+d+ ef++++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll+
  Thhalv10025116m  37 FLSKTYDMVEDPATDAIVSWGPANNSFVVWDPPEFSRDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHLLK 121
                      9********************999*****************************************999.........***************** PP

                      XXXXXXX CS
     HSF_DNA-bind  96 kikrkks 102
                      ++ r+ks
  Thhalv10025116m 122 TLSRRKS 128
                      ****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.2E-3933121IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004159.5E-6133126IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467859.66E-3534126IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000564.5E-203760IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.5E-3137126IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.5E-207587IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434076100IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.5E-2088100IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MDGVTGGGAK SGEAVSAPQR NPHPATLLGG NALPPPFLSK TYDMVEDPAT DAIVSWGPAN  60
NSFVVWDPPE FSRDLLPKYF KHNNFSSFVR QLNTYGFRKV DPDRWEFANE GFLRGQKHLL  120
KTLSRRKSVQ GHSSSSNPQS HQLSQGQGPM AVLSSCVEVG KFGLEEEVEQ LKRDKNVLMQ  180
ELVKLRQQQQ STDNKLQVMV KSLQAMEQRQ QQIVSFLAKA VQNPTFLSQF IQKQTDNNMH  240
VTEANKKRRL REDTTTAADD ENHSHSHSSA ASDGQIVKYQ PLRSDSTKSM IWNMMKTDDK  300
LPFLDGFSSP NRVSGVTLQE VVPTTSGQSQ AYAPVASGQP LSSLPSASTS LPDTVMPAIS  360
QMPQLTQESI NDFPTENYMD TEKDVSEAFI SPSPFLDGGS VQNQVDGISH DPDIDELMSN  420
CDLLEEYLAQ SPVLGDETIL ESGHANGGNM DKLIEELGLL TSQTEQL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-272812611120Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10025116m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:7948881}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006414192.10.0heat stress transcription factor A-1a
SwissprotP411510.0HFA1A_ARATH; Heat stress transcription factor A-1a
TrEMBLV4LYA90.0V4LYA9_EUTSA; Uncharacterized protein
STRINGXP_006414192.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM151011619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17750.10.0heat shock factor 1
Publications ? help Back to Top
  1. Hsu SF,Jinn TL
    AtHSBP functions in seed development and the motif is required for subcellular localization and interaction with AtHSFs.
    Plant Signal Behav, 2010. 5(8): p. 1042-4
    [PMID:20657173]
  2. Liu HC,Charng YY
    Common and distinct functions of Arabidopsis class A1 and A2 heat shock factors in diverse abiotic stress responses and development.
    Plant Physiol., 2013. 163(1): p. 276-90
    [PMID:23832625]
  3. Li S, et al.
    HEAT-INDUCED TAS1 TARGET1 Mediates Thermotolerance via HEAT STRESS TRANSCRIPTION FACTOR A1a-Directed Pathways in Arabidopsis.
    Plant Cell, 2014. 26(4): p. 1764-1780
    [PMID:24728648]
  4. Muench M,Hsin CH,Ferber E,Berger S,Mueller MJ
    Reactive electrophilic oxylipins trigger a heat stress-like response through HSFA1 transcription factors.
    J. Exp. Bot., 2016. 67(21): p. 6139-6148
    [PMID:27811081]