PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10025083m
Common NameEUTSA_v10025083mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family TALE
Protein Properties Length: 479aa    MW: 54347.1 Da    PI: 6.7211
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10025083mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.42.4e-083964341854
                      HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      +F++  ++yp+ +e+  LA + gLt +qV++WF N R +
  Thhalv10025083m 396 MFQNflHPYPKDSEKHLLAIRSGLTRSQVSNWFINARVR 434
                      5887779******************************88 PP
2BELL89.82.8e-29271341172
             BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      +rq+l++kk++Ll+ll++Vd+rY ++ ++++tv+s+F+a+++l++ +++t++Alk+iS+ +++L+++i++ i
  Thhalv10025083m 271 QRQALEAKKTHLLDLLQMVDDRYTHCIDEIHTVVSAFHAATELDP-QLHTRFALKTISFLYKNLRERISKNI 341
                      689******************************************.**********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005749.7E-50197339IPR006563POX domain
PfamPF075261.2E-28202338IPR006563POX domain
PROSITE profilePS5007110.981375438IPR001356Homeobox domain
SMARTSM003897.1E-5378442IPR001356Homeobox domain
CDDcd000861.08E-9378439No hitNo description
SuperFamilySSF466896.42E-15379447IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-25381444IPR009057Homeodomain-like
PfamPF059201.6E-14395434IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009640Biological Processphotomorphogenesis
GO:0010073Biological Processmeristem maintenance
GO:0010227Biological Processfloral organ abscission
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0090470Biological Processshoot organ boundary specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MDNDNTYSSL DNVMTNQNPL LMDLIPSRED STSFSTMLPW NSIRSDPLQM GSFDIFNSLL  60
ANKYLSSTSR STNVQETSNI ESFEVMAPPP PPPPLHPLNH LRPYDDSSNN MWSFGENSEF  120
FQAYSCAEGV VGPSEPIMST FGEEDFPFLI SNKRNELSLS LATDVSDECS EISLCAATKS  180
TRIASEQASC SSKDISNNVS EVIFGSKYLH SVQEILSHFA AYSLEGLENN PHRYSSRGTE  240
SRAANSAYTN LTEFLDGGFN NSEAGFGSTS QRQALEAKKT HLLDLLQMVD DRYTHCIDEI  300
HTVVSAFHAA TELDPQLHTR FALKTISFLY KNLRERISKN ILMMGSVLER GKEKSQENSM  360
FHQHCLLQQL KRKNHQIWRP QRGLPEKSVS VLRTWMFQNF LHPYPKDSEK HLLAIRSGLT  420
RSQVSNWFIN ARVRLWKPMI EEMYAEMNKR KLNNTHLQGN GASLRMPKSI MMSQQREK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A7e-14384442563Homeobox protein Meis2
3k2a_B7e-14384442563Homeobox protein Meis2
4xrm_A9e-14384442563Homeobox protein Meis2
4xrm_B9e-14384442563Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:17908157}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10025083m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. In etiolated seedlings, maximally expressed after 3 days of illumination.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0721740.0AY072174.1 Arabidopsis thaliana putative homeobox gene ATH1 protein (At4g32980) mRNA, complete cds.
GenBankAY0965130.0AY096513.1 Arabidopsis thaliana putative homeobox gene ATH1 protein (At4g32980) mRNA, complete cds.
GenBankX801260.0X80126.1 A.thaliana AtH1 mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006412405.10.0homeobox protein ATH1
SwissprotP487310.0ATH1_ARATH; Homeobox protein ATH1
TrEMBLV4MM230.0V4MM23_EUTSA; Uncharacterized protein
STRINGXP_006412405.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82282637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.10.0homeobox gene 1
Publications ? help Back to Top
  1. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]