PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10024866m
Common NameEUTSA_v10024866mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family ARR-B
Protein Properties Length: 540aa    MW: 60113.7 Da    PI: 6.4295
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10024866mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like83.42.4e-26187240155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      kpr+ Wt eLH++F+ av++L G ekA+Pk+il+lm+v+ Lt+e+v+SHLQk+R+
  Thhalv10024866m 187 KPRVLWTRELHNKFLAAVDHL-GVEKAVPKKILDLMNVEKLTRENVASHLQKFRS 240
                      79*******************.********************************7 PP
2Response_reg875.3e-29161241109
                      EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS
     Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealka 92 
                      vl vdD+++ +++l+++l + +y +v+++d+++ al+ll+e++  +Dl++ D++mp+mdG++ll+     e++lp+i+++ah++++++ + +k 
  Thhalv10024866m  16 VLAVDDDQTCLRILETLLHRCQY-HVTTTDQAQTALKLLRENKnkFDLVISDVDMPDMDGFKLLELVGL-EMDLPVIMLSAHSDPKYVMKGVKH 107
                      799********************.***************888888*******************87754.558********************* PP

                      TESEEEESS--HHHHHH CS
     Response_reg  93 GakdflsKpfdpeelvk 109
                      Ga d+l Kp+ +eel +
  Thhalv10024866m 108 GACDYLLKPVRIEELKN 124
                      **************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23001.0E-4213159No hitNo description
SuperFamilySSF521721.2E-3513132IPR011006CheY-like superfamily
SMARTSM004482.3E-3314126IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.01915130IPR001789Signal transduction response regulator, receiver domain
PfamPF000725.4E-2616124IPR001789Signal transduction response regulator, receiver domain
CDDcd001565.62E-2917129No hitNo description
PROSITE profilePS5129413.57184243IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-27184245IPR009057Homeodomain-like
SuperFamilySSF466893.14E-19185244IPR009057Homeodomain-like
TIGRFAMsTIGR015578.9E-25187240IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0010082Biological Processregulation of root meristem growth
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0031537Biological Processregulation of anthocyanin metabolic process
GO:0048367Biological Processshoot system development
GO:0080022Biological Processprimary root development
GO:0080036Biological Processregulation of cytokinin-activated signaling pathway
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MTVEQDLDQF PVGMRVLAVD DDQTCLRILE TLLHRCQYHV TTTDQAQTAL KLLRENKNKF  60
DLVISDVDMP DMDGFKLLEL VGLEMDLPVI MLSAHSDPKY VMKGVKHGAC DYLLKPVRIE  120
ELKNIWQHVV RKGKFKKMKS SLSNGESEGN SDQNGVKANR KRKDQFEEEE EDEERGIEND  180
DPTAQKKPRV LWTRELHNKF LAAVDHLGVE KAVPKKILDL MNVEKLTREN VASHLQKFRS  240
ALKKITNETN QQANMAAMDS HFMQMSSLKG LGGFHHHRPI PLGSGQFHGG AATMRQYPSN  300
RTLGRLNSLA GMFPHVSSSL PRNHNDGGGY ILQGLPIPPL QGLHIENNKT FPSFTSQQSS  360
PVVLEGHLQS SSPSSIPGFS PHLEMNKRLE DWSNAVLSST NIPQSGAHSK PDALEWNQFC  420
DSASPLMNTN VDTNPTSFCR NTDFGQSNSA QTEIFNPLQI KQQYANNLGP MTDAQQLTSN  480
NTKEGLVMGQ QKVESGFMAS DAGSLDDIVN SMMTQEQSQA DFGEGDLGFG WFNSHRTCI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-32183246164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. {ECO:0000269|PubMed:11574878}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00072SELEXTransfer from AT4G31920Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10024866m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3535330.0AK353533.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-50-C17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006412536.20.0LOW QUALITY PROTEIN: two-component response regulator ARR10
SwissprotO493970.0ARR10_ARATH; Two-component response regulator ARR10
TrEMBLV4MC700.0V4MC70_EUTSA; Two-component response regulator
STRINGXP_006412536.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19812879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31920.10.0response regulator 10
Publications ? help Back to Top
  1. Hill K,Schaller GE
    Enhancing plant regeneration in tissue culture: a molecular approach through manipulation of cytokinin sensitivity.
    Plant Signal Behav, 2013. 8(10): p. doi: 10.4161/psb.25709
    [PMID:23887495]
  2. Ramireddy E,Chang L,Schmülling T
    Cytokinin as a mediator for regulating root system architecture in response to environmental cues.
    Plant Signal Behav, 2014. 9(1): p. e27771
    [PMID:24509549]
  3. Choi SH, et al.
    Gene duplication of type-B ARR transcription factors systematically extends transcriptional regulatory structures in Arabidopsis.
    Sci Rep, 2014. 4: p. 7197
    [PMID:25425016]
  4. Cortleven A, et al.
    Cytokinin Regulates the Etioplast-Chloroplast Transition through the Two-Component Signaling System and Activation of Chloroplast-Related Genes.
    Plant Physiol., 2016. 172(1): p. 464-78
    [PMID:27388681]
  5. Street IH, et al.
    Cytokinin acts through the auxin influx carrier AUX1 to regulate cell elongation in the root.
    Development, 2016. 143(21): p. 3982-3993
    [PMID:27697901]
  6. Wang Y,Wu Y,Yu B,Yin Z,Xia Y
    EXTRA-LARGE G PROTEINs Interact with E3 Ligases PUB4 and PUB2 and Function in Cytokinin and Developmental Processes.
    Plant Physiol., 2017. 173(2): p. 1235-1246
    [PMID:27986866]
  7. Zhang TQ, et al.
    A Two-Step Model for de Novo Activation of WUSCHEL during Plant Shoot Regeneration.
    Plant Cell, 2017. 29(5): p. 1073-1087
    [PMID:28389585]
  8. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]
  9. Zubo YO, et al.
    Cytokinin induces genome-wide binding of the type-B response regulator ARR10 to regulate growth and development in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(29): p. E5995-E6004
    [PMID:28673986]
  10. Zhang F,May A,Irish VF
    Type-B ARABIDOPSIS RESPONSE REGULATORs Directly Activate WUSCHEL.
    Trends Plant Sci., 2017. 22(10): p. 815-817
    [PMID:28886911]
  11. Rong XF, et al.
    Type-B ARRs Control Carpel Regeneration Through Mediating AGAMOUS Expression in Arabidopsis.
    Plant Cell Physiol., 2018. 59(4): p. 756-764
    [PMID:29186581]
  12. Bustillo-Avendaño E, et al.
    Regulation of Hormonal Control, Cell Reprogramming, and Patterning during De Novo Root Organogenesis.
    Plant Physiol., 2018. 176(2): p. 1709-1727
    [PMID:29233938]