PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10024810m
Common NameEUTSA_v10024810mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family WRKY
Protein Properties Length: 561aa    MW: 61400.4 Da    PI: 7.4189
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10024810mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.12.8e-31214271260
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                      dDgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk  ers+ d+++++i Y+g+H+h+k
  Thhalv10024810m 214 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITDISYKGTHDHPK 271
                      8****************************************.***************85 PP
2WRKY106.81.1e-33383441159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+
  Thhalv10024810m 383 LDDGYRWRKYGQKVVRGNPNPRSYYKCTAAGCPVRKHVERASHDPKAVITTYEGKHNHD 441
                      59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.732208272IPR003657WRKY domain
SuperFamilySSF1182901.57E-24211272IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.7E-26212272IPR003657WRKY domain
SMARTSM007744.1E-33213271IPR003657WRKY domain
PfamPF031068.0E-24214270IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.6E-37368443IPR003657WRKY domain
SuperFamilySSF1182902.35E-29375443IPR003657WRKY domain
PROSITE profilePS5081138.825378443IPR003657WRKY domain
SMARTSM007747.7E-39383442IPR003657WRKY domain
PfamPF031064.1E-26384441IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009961Biological Processresponse to 1-aminocyclopropane-1-carboxylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 561 aa     Download sequence    Send to blast
MSSEANDRKK FQVDCPATID PTARHDSAGG GGGGGSVAGG ARYKLMSPAK LPISRSTDIT  60
VPPGMSPTSF LESPVFITNI KPEPSPTTGS LFKPRAVHIS SSSYTGRAFH QNTFTEQKSS  120
EFEFRPPASN MVYAELDKHK SEPPVQFQGQ GHGSAHSPSS ISEATASPSD LSRPTPPRQT  180
TPTNSDIPAG SEQDESVQTS QNDSRGSTPS ILADDGYNWR KYGQKHVKGS EFPRSYYKCT  240
HPNCEVKKLF ERSHDGQITD ISYKGTHDHP KPQPGRRNSG GLGMPSQEEK LDKYPPLTGR  300
DEKGVYNLSQ AIEQTGTPEV PPMSATDDGA EVAMSNKNKD DPDDDDPFTK RRRLDGTMEI  360
TPLVKPIREP RVVVQTLSEV DILDDGYRWR KYGQKVVRGN PNPRSYYKCT AAGCPVRKHV  420
ERASHDPKAV ITTYEGKHNH DVPTSKSSSN HDIQPRFRPE ETDTISLNLG VGISSDGPDH  480
TSNERQHQNQ QLVSQTHPNG VGFRFAHATP MSSYYASLNG GINHYGPRET QNETQNGDIS  540
SLNHSSYPYP HNIGRIQSGP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-36212443877Probable WRKY transcription factor 4
2lex_A2e-36212443877Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1349353KRRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00455DAPTransfer from AT4G26640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10024810m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3529170.0AK352917.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-11-P10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006413158.10.0probable WRKY transcription factor 20 isoform X1
SwissprotQ93WV00.0WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLE4MWM00.0E4MWM0_EUTHA; mRNA, clone: RTFL01-11-P10
TrEMBLV4P5580.0V4P558_EUTSA; Uncharacterized protein
STRINGXP_006413158.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31332867
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.20.0WRKY family protein