PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10024119m
Common NameEUTSA_v10024119mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family M-type_MADS
Protein Properties Length: 307aa    MW: 35198.9 Da    PI: 9.04
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10024119mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF52.27.8e-171150342
                     --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
           SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                     i n+s r+ tf kR++g+lKK +ELS+LC++ ++ ii+s+
  Thhalv10024119m 11 IANDSSRKATFKKRKKGLLKKVNELSTLCGITACAIIYSP 50
                     89*************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.114149IPR002100Transcription factor, MADS-box
SMARTSM004321.9E-24160IPR002100Transcription factor, MADS-box
CDDcd002661.70E-23285No hitNo description
SuperFamilySSF554553.53E-24295IPR002100Transcription factor, MADS-box
PRINTSPR004049.6E-9323IPR002100Transcription factor, MADS-box
PfamPF003193.6E-171151IPR002100Transcription factor, MADS-box
PRINTSPR004049.6E-92338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MTRKKVKLAY IANDSSRKAT FKKRKKGLLK KVNELSTLCG ITACAIIYSP YDSNPEVWPS  60
NSGVQRIVSD FQILPAMDQH KKMVDQELFL KQRIAKASEH LKKQKKDNRE MEMTEIMFQC  120
LVGNTGMFHL NIIDLNDLGY MIEQYLKDIN RKIEILGNAG MEMGNAAAIV TTTTAPTAVI  180
HEVGSSSSFA ADAAFFNPFQ HHHHQQQYRH PPVPHVGFYE QTWNLNLNQN HNQNQQQFFI  240
ERMNHPEQIS YAAEHMSFPF MDDNHRNHHH QQQRILSNFS TDPTIVSSSS IISVTSPNTN  300
NNIWFR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLAYIANDSSRKATFKKRK
22125KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10024119m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006392079.10.0agamous-like MADS-box protein AGL80
SwissprotQ9FJK31e-123AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLV4JVD30.0V4JVD3_EUTSA; Uncharacterized protein
STRINGXP_006392079.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-90AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]