PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10024097m
Common NameEUTSA_v10024097mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family WRKY
Protein Properties Length: 194aa    MW: 21667.3 Da    PI: 7.2345
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10024097mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.98.8e-33111169159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+vk++ +prsYYrCt+++C+vkk+v+r a+dp+vv++tYeg Hnh+
  Thhalv10024097m 111 LDDGYRWRKYGQKSVKNNAHPRSYYRCTYHTCNVKKQVQRLAKDPNVVVTTYEGVHNHP 169
                      59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.5E-3398169IPR003657WRKY domain
SuperFamilySSF1182901.31E-28103170IPR003657WRKY domain
PROSITE profilePS5081129.241106171IPR003657WRKY domain
SMARTSM007742.0E-38111170IPR003657WRKY domain
PfamPF031062.7E-26112169IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MEGFDIDTNP MLTLEEGENN SFSSFDDKTL MMMAPSLMFS GDMGPSSSSC SPASFHMSAQ  60
PENFHGGGGG GDAEEMGVLS DHNKKNKGKG KMRSSTMQRI AFHTRSDDDV LDDGYRWRKY  120
GQKSVKNNAH PRSYYRCTYH TCNVKKQVQR LAKDPNVVVT TYEGVHNHPC EKLMETLSPL  180
LRQLQFLTRV SDL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-26101168774Probable WRKY transcription factor 4
2lex_A2e-26101168774Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10024097m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006391687.11e-145probable WRKY transcription factor 56
SwissprotQ8VWQ41e-106WRK56_ARATH; Probable WRKY transcription factor 56
TrEMBLV4KNT11e-144V4KNT1_EUTSA; Uncharacterized protein
STRINGXP_006391687.11e-145(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50928154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64000.12e-91WRKY DNA-binding protein 56