PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10023873m
Common NameEUTSA_v10023873mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family M-type_MADS
Protein Properties Length: 306aa    MW: 34925.6 Da    PI: 9.1168
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10023873mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF52.27.8e-171150342
                     --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
           SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                     i n+s r+ tf kR++g+lKK +ELS+LC++ ++ ii+s+
  Thhalv10023873m 11 IANDSSRKATFKKRKKGLLKKVNELSTLCGITACAIIYSP 50
                     89*************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.114149IPR002100Transcription factor, MADS-box
SMARTSM004321.9E-24160IPR002100Transcription factor, MADS-box
CDDcd002661.04E-23285No hitNo description
SuperFamilySSF554552.09E-25295IPR002100Transcription factor, MADS-box
PRINTSPR004049.5E-9323IPR002100Transcription factor, MADS-box
PfamPF003193.6E-171151IPR002100Transcription factor, MADS-box
PRINTSPR004049.5E-92338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MTRKKVKLAY IANDSSRKAT FKKRKKGLLK KVNELSTLCG ITACAIIYSP YDSNPEVWPS  60
NSGVQRVVSD FQTLPEMDQH KKMVDQESFL KQRIAKASEH LKKQKKDNRE IEMTEIMFQC  120
LVGNTGMFHL NIMDLNDLGY MIEQYLKDIN RRIEILGNAG MEMGNVVATV TTTTAPTAVI  180
HEVGSSSSFA AAAAFFNPFQ HHHQQQCRHP PVRHVGFYEQ TRNLNLNQNH NQNQQQFFME  240
IMNHPEQISY AAEHMSFPFM DDNNHNHHHQ QQRIPNNSST APTIVSSNSI IPVTSPNVNN  300
NVWFR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLAYIANDSSRKATFKKRK
22125KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00553DAPTransfer from AT5G48670Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10023873m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006392157.10.0agamous-like MADS-box protein AGL80
SwissprotQ9FJK31e-128AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLV4KPY20.0V4KPY2_EUTSA; Uncharacterized protein
STRINGXP_006392157.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-114AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]