PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10023865m | ||||||||
Common Name | EUTSA_v10023865mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | ERF | ||||||||
Protein Properties | Length: 181aa MW: 20534.2 Da PI: 5.4351 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.5 | 5.2e-16 | 30 | 79 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr++ +Wv+e+r+p +r++lg++ tae+Aa+a++ a ++l+g Thhalv10023865m 30 IYRGVRRRN-GDKWVCEVREP-----IhqRRIWLGTYPTAEMAARAHDVAVLALRG 79 69****877.9******9997.....337*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.1E-11 | 29 | 79 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.66E-26 | 29 | 89 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 8.1E-29 | 30 | 89 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.1E-25 | 30 | 93 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.24E-20 | 30 | 89 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 21.904 | 30 | 87 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.4E-8 | 31 | 42 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.4E-8 | 53 | 69 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010371 | Biological Process | regulation of gibberellin biosynthetic process | ||||
GO:0016049 | Biological Process | cell growth | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MENDDISLAE MRPKKKRAGR RIFKETRHPI YRGVRRRNGD KWVCEVREPI HQRRIWLGTY 60 PTAEMAARAH DVAVLALRGR TACLNFSDSA WRLPAPESID PDTIRRTAAE AAEIFRPPEF 120 GDEITVFPSS GGGELATSEE GEGFAGMMMR LAEEPLMSPP RSYIDMNTSV YVEEERCYEE 180 * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates cold or dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00104 | PBM | Transfer from AT1G63030 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10023865m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF520733 | 0.0 | EF520733.1 Thellungiella halophila putative C-repeat binding factor (DREB1E) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006391789.1 | 1e-130 | dehydration-responsive element-binding protein 1E | ||||
Swissprot | Q9SGJ6 | 1e-106 | DRE1E_ARATH; Dehydration-responsive element-binding protein 1E | ||||
TrEMBL | B2BI35 | 1e-129 | B2BI35_EUTHA; Putative C-repeat binding factor | ||||
TrEMBL | V4JUP4 | 1e-129 | V4JUP4_EUTSA; Uncharacterized protein | ||||
STRING | XP_006391789.1 | 1e-130 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM355 | 28 | 187 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G63030.2 | 1e-109 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10023865m |
Entrez Gene | 18010284 |