PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Thhalv10023054m | ||||||||
Common Name | EUTSA_v10023054mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 251aa MW: 28374.6 Da PI: 10.2017 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 55.7 | 8.7e-18 | 4 | 82 | 17 | 99 |
E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +p +f+++ ++ e s +++++ ++g sW++ + +k+++ ++ ++GW++Fv++n L e Df++F+++g+++f +vk+f+k Thhalv10023054m 4 AIPYDFMRSVSEH-ELSGKMKIRAQWGSSWDIGI--SKNPRFyFMEKSGWEKFVRENYLGEDDFLTFTHKGKMCF--NVKIFKK 82 79*****999654.6778****************..******555569**********************99***..***9987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 1.7E-11 | 1 | 83 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.451 | 1 | 83 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.5E-16 | 3 | 82 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 7.46E-16 | 3 | 84 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.9E-17 | 4 | 83 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.33E-14 | 5 | 81 | No hit | No description |
SMART | SM01019 | 0.0095 | 158 | 249 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.6E-7 | 168 | 246 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.1E-8 | 169 | 247 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 7.725 | 197 | 250 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 251 aa Download sequence Send to blast |
SQRAIPYDFM RSVSEHELSG KMKIRAQWGS SWDIGISKNP RFYFMEKSGW EKFVRENYLG 60 EDDFLTFTHK GKMCFNVKIF KKDGLEMICP QQSMAFFASS SQVKREGDEV VSPDLGPTAT 120 ETNGEGKFKR KLNSGKKKAK ESESSTMIKE TVSARRDCAG ASSSSSAEFT PIRVSVSRNL 180 MPKQRTTFKI HHPDMKKSWN VVYVPRHEAG GLFSSGWRIL VQEYPVLVGE ACKFTFLKPT 240 ELLLIVSKRA * |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Thhalv10023054m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024016605.1 | 1e-121 | B3 domain-containing protein At2g35310 | ||||
Swissprot | Q5BPT7 | 4e-86 | Y2621_ARATH; B3 domain-containing protein At2g16210 | ||||
TrEMBL | V4MEH2 | 0.0 | V4MEH2_EUTSA; Uncharacterized protein (Fragment) | ||||
STRING | XP_006409470.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM565 | 21 | 135 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G16210.1 | 4e-80 | B3 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Thhalv10023054m |
Entrez Gene | 18025917 |
Publications ? help Back to Top | |||
---|---|---|---|
|