PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT2G16210.1
Common NameF7H1.23
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 291aa    MW: 33217 Da    PI: 10.6679
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT2G16210.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.89.5e-1919112198
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                  ffkv  + +v++++   lp +f +++   ke s++++++ ++g+sWev +  +k+++  ++ ++GW++Fv++n L   + ++F+++g++ f  +v +f
  AT2G16210.1  19 FFKVVQSINVSSENKRALPHDFSRSFTD-KELSRKMKIRAQWGNSWEVGI--SKNPRFyFMEKSGWEKFVRDNALGNSELLTFTHKGKMHF--TVNIF 111
                  899**9*****************99964.57999****************..******555569********************9998999..88887 PP

                  - CS
           B3  98 r 98 
                  +
  AT2G16210.1 112 K 112
                  5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.1E-2013114IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.02E-1914120IPR015300DNA-binding pseudobarrel domain
CDDcd100172.37E-1718112No hitNo description
SMARTSM010191.1E-1819114IPR003340B3 DNA binding domain
PfamPF023626.9E-1719112IPR003340B3 DNA binding domain
PROSITE profilePS5086313.73319114IPR003340B3 DNA binding domain
SuperFamilySSF1019362.94E-13197288IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.0E-10198288IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.952200291IPR003340B3 DNA binding domain
SMARTSM010192.4E-14203291IPR003340B3 DNA binding domain
CDDcd100172.47E-6214287No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009052anatomyflower pedicel
PO:0020047anatomymicrosporocyte
PO:0025022anatomycollective leaf structure
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0001185developmental stageplant embryo globular stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MATNAGYLRC KEERKNESFF KVVQSINVSS ENKRALPHDF SRSFTDKELS RKMKIRAQWG  60
NSWEVGISKN PRFYFMEKSG WEKFVRDNAL GNSELLTFTH KGKMHFTVNI FKLDGKEMMQ  120
PPQSRSFFAS SSRIKTEQEE NDIKEEVVVS SNRGQTTAAE SKGRKLNLGK RAAKESQSSK  180
RTEKVVRARS DYAGASSSTA AAFTILFKQG YLVFLRIPNS VSKDQVPDEK TVFKIHHPNG  240
KKSWNVVYLE RFGAFSGGWR RVVKEYPLAV GDTCKFTFIK PKELLLVVSK P
Expression -- Microarray ? help Back to Top
Source ID E-value
Genevisible263092_at0.0
Expression AtlasAT2G16210-
AtGenExpressAT2G16210-
ATTED-IIAT2G16210-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT2G16210.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT2G16210
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY9247410.0AY924741.1 Arabidopsis thaliana hypothetical protein (At2g16210) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_179217.20.0Transcriptional factor B3 family protein
SwissprotQ5BPT70.0Y2621_ARATH; B3 domain-containing protein At2g16210
TrEMBLA0A178VWE00.0A0A178VWE0_ARATH; Uncharacterized protein
STRINGAT2G16210.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Publications ? help Back to Top
  1. Xiao YL,Malik M,Whitelaw CA,Town CD
    Cloning and sequencing of cDNAs for hypothetical genes from chromosome 2 of Arabidopsis.
    Plant Physiol., 2002. 130(4): p. 2118-28
    [PMID:12481096]
  2. Wijeratne AJ, et al.
    Differential gene expression in Arabidopsis wild-type and mutant anthers: insights into anther cell differentiation and regulatory networks.
    Plant J., 2007. 52(1): p. 14-29
    [PMID:17666023]
  3. Swaminathan K,Peterson K,Jack T
    The plant B3 superfamily.
    Trends Plant Sci., 2008. 13(12): p. 647-55
    [PMID:18986826]
  4. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]