PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10022800m
Common NameEUTSA_v10022800mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family NAC
Protein Properties Length: 286aa    MW: 32699.7 Da    PI: 8.8334
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10022800mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM149.81.4e-4681353128
              NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                      pGfrFhPt+eel+++yLk+ + gk+ ++ evi  ++iy+++Pw+Lp  ++  +e+ewyfF++r++k+ +g r++r+t++gyWkatg+d++++s 
  Thhalv10022800m   8 PGFRFHPTEEELLDFYLKNMIYGKRSKA-EVIGFLNIYRHDPWELPgLSMIMGEREWYFFVPRERKHGNGGRPSRTTEKGYWKATGSDRKIISL 100
                      9************************999.99***************66777899*************************************987 PP

              NAM  96 ..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++++glkktLvfy+grap g+ktdWvm+e+r+
  Thhalv10022800m 101 sePKRVIGLKKTLVFYRGRAPGGSKTDWVMNEFRM 135
                      557778***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100553.8596153IPR003441NAC domain
SuperFamilySSF1019412.48E-557153IPR003441NAC domain
PfamPF023651.8E-248135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0010200Biological Processresponse to chitin
GO:0045792Biological Processnegative regulation of cell size
GO:0048281Biological Processinflorescence morphogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MSKEIELPGF RFHPTEEELL DFYLKNMIYG KRSKAEVIGF LNIYRHDPWE LPGLSMIMGE  60
REWYFFVPRE RKHGNGGRPS RTTEKGYWKA TGSDRKIISL SEPKRVIGLK KTLVFYRGRA  120
PGGSKTDWVM NEFRMPDNCT LPKDVVLCKI YRKATSLKVL EQRAEMEAKM NQTCPSSPLS  180
SSETISFVGK EEDLMTSFPY PQAVAMREAN DISMLQGHTE NAKSEEKHRE TERKEPSSSL  240
KLPCGVLPLP ELQLPKPGLE WGPDQFLSIS PWLQNLTPIV NLLNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-43815819170NO APICAL MERISTEM PROTEIN
1ut4_B6e-43815819170NO APICAL MERISTEM PROTEIN
1ut7_A6e-43815819170NO APICAL MERISTEM PROTEIN
1ut7_B6e-43815819170NO APICAL MERISTEM PROTEIN
3swm_A5e-43815622171NAC domain-containing protein 19
3swm_B5e-43815622171NAC domain-containing protein 19
3swm_C5e-43815622171NAC domain-containing protein 19
3swm_D5e-43815622171NAC domain-containing protein 19
3swp_A5e-43815622171NAC domain-containing protein 19
3swp_B5e-43815622171NAC domain-containing protein 19
3swp_C5e-43815622171NAC domain-containing protein 19
3swp_D5e-43815622171NAC domain-containing protein 19
4dul_A6e-43815819170NAC domain-containing protein 19
4dul_B6e-43815819170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10022800m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3533070.0AK353307.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-40-I17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006409356.10.0NAC domain-containing protein 22
SwissprotQ10S653e-86NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBLE4MXR00.0E4MXR0_EUTHA; mRNA, clone: RTFL01-40-I17
TrEMBLV4M3M00.0V4M3M0_EUTSA; Uncharacterized protein
STRINGXP_006409356.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38992860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17040.11e-174NAC domain containing protein 36
Publications ? help Back to Top
  1. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]