PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10022229m | ||||||||
Common Name | EUTSA_v10022229mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 201aa MW: 22859.4 Da PI: 8.6127 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 54.2 | 1.8e-17 | 22 | 69 | 3 | 50 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 +e + r +tfskR+ gi+KK +E+ +LCd+e+a ++fs+ gk y+++ Thhalv10022229m 22 VETYADRMITFSKRKSGIFKKMNEIITLCDVEAAFMVFSQAGKPYTFA 69 677889*****************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 22.343 | 12 | 72 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 6.6E-22 | 12 | 71 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.66E-22 | 13 | 86 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.9E-16 | 14 | 34 | IPR002100 | Transcription factor, MADS-box |
Gene3D | G3DSA:2.40.128.20 | 6.8E-5 | 19 | 128 | IPR012674 | Calycin |
Pfam | PF00319 | 5.1E-19 | 23 | 68 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.9E-16 | 34 | 49 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.9E-16 | 49 | 70 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MSMKHTKGKQ TKGKQKIEMK VVETYADRMI TFSKRKSGIF KKMNEIITLC DVEAAFMVFS 60 QAGKPYTFAH PSMEKVVGLL RHEPSSKDVT NTGALVEAYK RQRIEELMKK YVDLVEELEM 120 EKENVKNLKG SRFEKKLDKM WWNIPSEGLS MEELKQRHQA FVELHDSLCA INIQRLGKDC 180 DGSSSGHVER GHCGEGEAEA * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10022229m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006408223.1 | 1e-148 | agamous-like MADS-box protein AGL62 | ||||
TrEMBL | V4NSM7 | 1e-147 | V4NSM7_EUTSA; Uncharacterized protein | ||||
STRING | XP_006408223.1 | 1e-147 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM86 | 28 | 390 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04100.1 | 1e-72 | AGAMOUS-like 57 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10022229m |
Entrez Gene | 18024929 |