PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10022186m
Common NameEUTSA_v10022186mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family MYB_related
Protein Properties Length: 322aa    MW: 36097.2 Da    PI: 4.9957
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10022186mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.56.1e-1388133247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++W++eE+  ++++ + + +g+Wk I+r   k+Rt+ q+ s+ qky
  Thhalv10022186m  88 LPWSEEEHGNFLKGLQHFKKGDWKEISRVYVKTRTATQVASHAQKY 133
                      69*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007175.5253IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-879134IPR009057Homeodomain-like
PROSITE profilePS5129415.63782138IPR017930Myb domain
SuperFamilySSF466899.36E-1684138IPR009057Homeodomain-like
TIGRFAMsTIGR015576.9E-1685137IPR006447Myb domain, plants
SMARTSM007174.0E-786136IPR001005SANT/Myb domain
CDDcd001671.43E-789134No hitNo description
PfamPF002491.5E-989133IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MASRQWTRVD DKKVEEALLR FPDHTPHRLE VIADYLQFPL KDVMYYYDAL VHDIDLIESG  60
RVSVPVYPDN SGGISSQSNV EKDRKRGLPW SEEEHGNFLK GLQHFKKGDW KEISRVYVKT  120
RTATQVASHA QKYFLRQNLE SKAKKRSSIH DITSVPAKDE TVPAGSDLDS SKDQPLTADL  180
DSTKDQPHTG DLDSTKDQPH TADLDSVMPH IGDLDSTKDQ QHIGDLDSTK NQPHIGDLDM  240
PHTGDLDSMM PHIGDLDSMM PHIGDFDSMM GQPHIGDLDS LMNQPYFGDL DSMMRQPLSG  300
DLDSMMNQPH IDSMMGKPHI G*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10022186m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024015273.10.0transcription factor DIVARICATA
SwissprotQ8S9H72e-38DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLV4NQW20.0V4NQW2_EUTSA; Uncharacterized protein
STRINGXP_006407533.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17289711
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09450.12e-56MYB_related family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]